Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3g20
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    27   3.3  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.3  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   5.7  
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|...    25   7.5  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   7.5  
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    25   9.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.9  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   9.9  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    25   9.9  

>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -1

Query: 319 TTLPPNITQQTHVLDYNTNKK*TIRYVHCNMKINKVSAYHSALQY 185
           +T+P N+ ++T ++DY++ +K  I++    + +   SAY   + Y
Sbjct: 160 STMPYNVNKETGIIDYDSLEKAAIQF-RPKVIVAGASAYARLVDY 203


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 157 NQHLHSTNIQEKNIKIDCNKLLFKGT 80
           N+H HS ++Q     +D NK+L +GT
Sbjct: 203 NKHRHSASLQNLYKLLDENKVLMQGT 228


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 610 FLTRRS*LFAANCICVTIKLQANITFISITKDSAGKDRGRESA 482
           F+T+R+ L     + V  KLQA +   S+   S   + GR  +
Sbjct: 226 FITKRAALLERQAVGVYSKLQARLESYSLPSSSISLNNGRNQS 268


>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = -1

Query: 553 LQANITFISITKDSAGKDRGRESAILRTARSAGSNCRMDKGLSFAHSFKLKSFSNSIFLS 374
           LQ N+   +  KDS G+D      I +  RS   N + ++ +  +   K K    +I   
Sbjct: 215 LQKNVANFTSIKDSGGRDNLYIQTISKPRRSYVQNNKSEQTIKPSKQNKQKEEKKTISQG 274

Query: 373 SKTRS 359
           +K  S
Sbjct: 275 NKPNS 279


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/63 (22%), Positives = 25/63 (39%)
 Frame = -1

Query: 577 NCICVTIKLQANITFISITKDSAGKDRGRESAILRTARSAGSNCRMDKGLSFAHSFKLKS 398
           N     +    +++FI    D+AG+     S  L+ A + G      +     HSF   +
Sbjct: 170 NSFLKDVNRSIDLSFIKYVGDAAGRPGDHNSTDLKFAENIGIKFETPEQFFLGHSFVPPN 229

Query: 397 FSN 389
           F +
Sbjct: 230 FES 232


>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 104 QQTPVQRDGVTTNDL*VIEFVERHTPSRRTDM 9
           + +P   DG T+ND   +EF   H P ++  +
Sbjct: 242 KHSPALSDGTTSNDGAPLEFDTTHLPEKQVTL 273


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 378  CHPKHEVSRELSHIIELITAQH 313
            CHP ++V + L HII  + A +
Sbjct: 1908 CHPNNKVYKILEHIIANVVASY 1929


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 24/92 (26%), Positives = 39/92 (42%)
 Frame = -3

Query: 641 YNISTDVLIPVPYTTFIAFRR*LYLCYNKTSSQYNVYFDYEGFCGKGSWEGICYPEDCTV 462
           YN S   L+ +   + I F   L+LCY K+S +  V ++ +      S+ G    E   +
Sbjct: 3   YNKSLKSLVFILLASQIVFV--LFLCYGKSSRELGVKWNSDIRSWMTSYVGF-NGETAAI 59

Query: 461 GRVQLQNGQRLVLRPFFQAEIVFEFHFSVIQN 366
              QL   +++   P +  EIV   H     N
Sbjct: 60  SEEQLIWAEKI---PDYNEEIVVRLHLEEENN 88


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 381 KMEFENDFSLKEWAKDKPLSILQL-DPADR 467
           +ME  ++ SLK WA+ + LSI +L D  DR
Sbjct: 266 RMEDGDEESLKVWARFRDLSITKLKDTYDR 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,256
Number of Sequences: 5004
Number of extensions: 50580
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)