Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3g20
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309...    33   0.21 
08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323...    28   5.9  
05_04_0176 + 18749945-18749969,18750186-18750751,18750876-187509...    28   7.8  

>05_04_0148 -
           18426903-18427106,18430516-18430594,18430752-18430935,
           18431020-18431063,18432028-18432165,18432713-18434511
          Length = 815

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 256 TFYLYYNLKHXXXXXXXXXXLCCDQFNYVREFARDFV-FWMTEKWNSKTISA*KNGRRTS 432
           T  L Y + H          +C D + ++ + ARD+V F +   WN+  ++A   G RTS
Sbjct: 737 TAKLDYMVWHELAFDMEDWHVCWDGYGFLGKLARDYVTFMILSHWNTMFLNADDAGARTS 796

Query: 433 LCPFCSWTRPTVQSSG 480
                   RP   SSG
Sbjct: 797 ----AERQRPISSSSG 808


>08_02_0182 -
           13930436-13931245,13931348-13931627,13931788-13932324,
           13932482-13932579,13932678-13933118
          Length = 721

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 17  SAGSVYDAQRIL*PINRLLSLRPFEQEFVAVNLNIFF 127
           +AG  YD  RIL P    L+LR ++  +  +NL+I F
Sbjct: 312 AAGGRYDTARILDPATFTLNLREYD-AYGRINLSILF 347


>05_04_0176 +
           18749945-18749969,18750186-18750751,18750876-18750944,
           18752128-18752325,18752791-18752922,18753658-18753744,
           18753845-18754288,18754644-18754811,18755129-18755359,
           18755893-18756008,18756125-18756407
          Length = 772

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 163 QYNQHLHSTNIQEKNIKIDC 104
           +Y+  L STN++E NI +DC
Sbjct: 568 EYSTWLSSTNVREANIYVDC 587


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,926,496
Number of Sequences: 37544
Number of extensions: 300886
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)