Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3g20
         (673 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U33837-1|AAB41649.1| 4655|Homo sapiens gp330 precursor protein.        35   0.23 
AY265358-1|AAP88586.1| 4655|Homo sapiens glycoprotein receptor g...    35   0.23 
AY265357-1|AAP88585.1| 4655|Homo sapiens glycoprotein receptor g...    35   0.23 
AC007556-2|AAX88965.1| 3881|Homo sapiens unknown protein.              35   0.23 
U04441-1|AAB02882.1| 1751|Homo sapiens glycoprotein 330 protein.       34   0.40 
L37368-1|AAA92859.1|  305|Homo sapiens RNA-binding protein protein.    32   2.1  
BC108316-1|AAI08317.1|  305|Homo sapiens RNA binding protein S1,...    32   2.1  
BC001838-1|AAH01838.1|  305|Homo sapiens RNA binding protein S1,...    32   2.1  
BC001659-1|AAH01659.1|  305|Homo sapiens RNA binding protein S1,...    32   2.1  
AF274003-1|AAL56665.1|  282|Homo sapiens splicing-related factor...    32   2.1  
AF015608-1|AAC39791.1|  305|Homo sapiens SR protein protein.           31   2.8  

>U33837-1|AAB41649.1| 4655|Homo sapiens gp330 precursor protein.
          Length = 4655

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -3

Query: 572  YLCYNKTSSQYNVYFDYEGFCGKGSWEGICYPEDCTVGRVQLQNGQRLVLRPF 414
            + C N    QY+   DY   CG GS E  C   DC      + N +R + R F
Sbjct: 2746 FTCANGRCVQYSYRCDYYNDCGDGSDEAGCLFRDCNATTEFMCNNRRCIPREF 2798


>AY265358-1|AAP88586.1| 4655|Homo sapiens glycoprotein receptor
            gp330/megalin precursor protein.
          Length = 4655

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -3

Query: 572  YLCYNKTSSQYNVYFDYEGFCGKGSWEGICYPEDCTVGRVQLQNGQRLVLRPF 414
            + C N    QY+   DY   CG GS E  C   DC      + N +R + R F
Sbjct: 2746 FTCANGRCVQYSYRCDYYNDCGDGSDEAGCLFRDCNATTEFMCNNRRCIPREF 2798


>AY265357-1|AAP88585.1| 4655|Homo sapiens glycoprotein receptor
            gp330/megalin precursor protein.
          Length = 4655

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -3

Query: 572  YLCYNKTSSQYNVYFDYEGFCGKGSWEGICYPEDCTVGRVQLQNGQRLVLRPF 414
            + C N    QY+   DY   CG GS E  C   DC      + N +R + R F
Sbjct: 2746 FTCANGRCVQYSYRCDYYNDCGDGSDEAGCLFRDCNATTEFMCNNRRCIPREF 2798


>AC007556-2|AAX88965.1| 3881|Homo sapiens unknown protein.
          Length = 3881

 Score = 35.1 bits (77), Expect = 0.23
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -3

Query: 572  YLCYNKTSSQYNVYFDYEGFCGKGSWEGICYPEDCTVGRVQLQNGQRLVLRPF 414
            + C N    QY+   DY   CG GS E  C   DC      + N +R + R F
Sbjct: 1972 FTCANGRCVQYSYRCDYYNDCGDGSDEAGCLFRDCNATTEFMCNNRRCIPREF 2024


>U04441-1|AAB02882.1| 1751|Homo sapiens glycoprotein 330 protein.
          Length = 1751

 Score = 34.3 bits (75), Expect = 0.40
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -3

Query: 572 YLCYNKTSSQYNVYFDYEGFCGKGSWEGICYPEDCTVGRVQLQNGQRLVLRPF 414
           + C N    QY+   DY   CG GS E  C   DC      + N +R + R F
Sbjct: 42  FTCANGRCVQYSYRCDYYNDCGDGSDETGCLFRDCNATTEFMCNNRRCIPREF 94


>L37368-1|AAA92859.1|  305|Homo sapiens RNA-binding protein protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = -1

Query: 523 TKDSAGKDRGRESAILRTARSAGSN---CRMDKGLSFAHSFKLKSFSNSIFLSSKTRSLA 353
           TK+S+ KDRGR+    R + S+GS+    R     S   S    S S S   S+ +RS +
Sbjct: 49  TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108

Query: 352 RTLAHN*IDHSTTLPPNITQQTH 284
            + + +    S++  P+ +++ H
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRH 131


>BC108316-1|AAI08317.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = -1

Query: 523 TKDSAGKDRGRESAILRTARSAGSN---CRMDKGLSFAHSFKLKSFSNSIFLSSKTRSLA 353
           TK+S+ KDRGR+    R + S+GS+    R     S   S    S S S   S+ +RS +
Sbjct: 49  TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108

Query: 352 RTLAHN*IDHSTTLPPNITQQTH 284
            + + +    S++  P+ +++ H
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRH 131


>BC001838-1|AAH01838.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = -1

Query: 523 TKDSAGKDRGRESAILRTARSAGSN---CRMDKGLSFAHSFKLKSFSNSIFLSSKTRSLA 353
           TK+S+ KDRGR+    R + S+GS+    R     S   S    S S S   S+ +RS +
Sbjct: 49  TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108

Query: 352 RTLAHN*IDHSTTLPPNITQQTH 284
            + + +    S++  P+ +++ H
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRH 131


>BC001659-1|AAH01659.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = -1

Query: 523 TKDSAGKDRGRESAILRTARSAGSN---CRMDKGLSFAHSFKLKSFSNSIFLSSKTRSLA 353
           TK+S+ KDRGR+    R + S+GS+    R     S   S    S S S   S+ +RS +
Sbjct: 49  TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108

Query: 352 RTLAHN*IDHSTTLPPNITQQTH 284
            + + +    S++  P+ +++ H
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRH 131


>AF274003-1|AAL56665.1|  282|Homo sapiens splicing-related factor
           RNPS1 protein.
          Length = 282

 Score = 31.9 bits (69), Expect = 2.1
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = -1

Query: 523 TKDSAGKDRGRESAILRTARSAGSN---CRMDKGLSFAHSFKLKSFSNSIFLSSKTRSLA 353
           TK+S+ KDRGR+    R + S+GS+    R     S   S    S S S   S+ +RS +
Sbjct: 26  TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 85

Query: 352 RTLAHN*IDHSTTLPPNITQQTH 284
            + + +    S++  P+ +++ H
Sbjct: 86  SSTSRSSSSSSSSGSPSPSRRRH 108


>AF015608-1|AAC39791.1|  305|Homo sapiens SR protein protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 2.8
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = -1

Query: 523 TKDSAGKDRGRESAILRTARSAGSN---CRMDKGLSFAHSFKLKSFSNSIFLSSKTRSLA 353
           TK+S+ KDRGR+    R + S+GS+    R     S   S    S S S   S+ +RS +
Sbjct: 49  TKESSEKDRGRDKTRKRGSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108

Query: 352 RTLAHN*IDHSTTLPPNITQQTH 284
            + + +    S++  P+ +++ H
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRH 131


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,972,726
Number of Sequences: 237096
Number of extensions: 1689559
Number of successful extensions: 3349
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3349
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)