Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3g20
         (673 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ011925-1|CAA09870.1| 2285|Drosophila melanogaster Kakapo protein.    58   8e-09
AE013599-1788|AAG22268.2| 5390|Drosophila melanogaster CG18076-P...    58   8e-09
AE013599-1787|AAF58317.1| 5385|Drosophila melanogaster CG18076-P...    58   8e-09
AE013599-3254|AAF46751.2| 1831|Drosophila melanogaster CG30263-P...    29   7.6  

>AJ011925-1|CAA09870.1| 2285|Drosophila melanogaster Kakapo protein.
          Length = 2285

 Score = 58.4 bits (135), Expect = 8e-09
 Identities = 27/28 (96%), Positives = 27/28 (96%)
 Frame = +3

Query: 405 SLKEWAKDKPLSILQLDPADRAVLRIAD 488
           SL EWAKDKPLSILQLDPADRAVLRIAD
Sbjct: 6   SLSEWAKDKPLSILQLDPADRAVLRIAD 33


>AE013599-1788|AAG22268.2| 5390|Drosophila melanogaster CG18076-PB,
           isoform B protein.
          Length = 5390

 Score = 58.4 bits (135), Expect = 8e-09
 Identities = 27/28 (96%), Positives = 27/28 (96%)
 Frame = +3

Query: 405 SLKEWAKDKPLSILQLDPADRAVLRIAD 488
           SL EWAKDKPLSILQLDPADRAVLRIAD
Sbjct: 6   SLSEWAKDKPLSILQLDPADRAVLRIAD 33


>AE013599-1787|AAF58317.1| 5385|Drosophila melanogaster CG18076-PG,
           isoform G protein.
          Length = 5385

 Score = 58.4 bits (135), Expect = 8e-09
 Identities = 27/28 (96%), Positives = 27/28 (96%)
 Frame = +3

Query: 405 SLKEWAKDKPLSILQLDPADRAVLRIAD 488
           SL EWAKDKPLSILQLDPADRAVLRIAD
Sbjct: 6   SLSEWAKDKPLSILQLDPADRAVLRIAD 33


>AE013599-3254|AAF46751.2| 1831|Drosophila melanogaster CG30263-PA
            protein.
          Length = 1831

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 416  MGEGQAFVHSAVGPGRPCSPQDSRFPPTILSRRILRNR 529
            MG  ++    AVG  R  S +    PP ILSRR  R+R
Sbjct: 998  MGRRKSISPDAVGQNRRVSSRGKPEPPEILSRRNSRSR 1035


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,405,998
Number of Sequences: 53049
Number of extensions: 541982
Number of successful extensions: 1376
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)