Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3g16
(797 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1443 + 26575172-26575181,26575709-26575805,26575900-265759... 380 e-106
01_01_1232 - 9966448-9966708,9966818-9966928,9967142-9967176,996... 175 3e-44
04_04_0108 - 22830485-22830706,22830817-22830954,22831091-228313... 32 0.46
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 30 1.9
10_08_0036 + 14325793-14326457,14326610-14328035 30 2.5
04_03_0824 + 20086639-20087263,20087282-20087463,20087569-200877... 30 2.5
01_05_0329 - 21037980-21038378,21038517-21038737,21038827-210389... 29 5.7
04_03_0916 + 20794240-20794246,20794585-20796545 28 7.5
11_01_0438 - 3349506-3351239 28 9.9
04_03_0914 + 20788103-20789642,20790036-20790529 28 9.9
03_01_0047 + 391689-392738,392832-392999,393091-393195,393529-39... 28 9.9
>07_03_1443 +
26575172-26575181,26575709-26575805,26575900-26575985,
26576073-26576117,26576788-26576918,26577016-26577126,
26577215-26577472
Length = 245
Score = 380 bits (934), Expect = e-106
Identities = 175/236 (74%), Positives = 205/236 (86%)
Frame = +3
Query: 90 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 269
MA R+QFENN EVGVFSKLTN YCLVAIGGSENFYS FE+ELA+ IPV+ S+GG RIIG
Sbjct: 1 MATRIQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPVVKTSIGGTRIIG 60
Query: 270 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACNDYVALVHPD 449
R+ VGNKNGLL+P +TTD ELQH+RN LP+ V +QR++ERLSALGN +ACND+VAL HPD
Sbjct: 61 RLCVGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIDERLSALGNCVACNDHVALTHPD 120
Query: 450 LDKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVP 629
LDK TEE++AD L VEVFRQTIAGN+LVGSY A++NRGGLVHP T+I+D DELS+LLQVP
Sbjct: 121 LDKATEELIADVLGVEVFRQTIAGNILVGSYCAITNRGGLVHPHTSIEDLDELSTLLQVP 180
Query: 630 LVAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTEISVIESVFQLNDAKPTAITSTM 797
LVAGTVNRGS+V+AAGM VNDW AFCG DTT+TE+SVIESVF+L + +P AI M
Sbjct: 181 LVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREGQPAAIVDDM 236
>01_01_1232 -
9966448-9966708,9966818-9966928,9967142-9967176,
9967469-9967599,9967683-9967779,9967907-9967916
Length = 214
Score = 175 bits (427), Expect = 3e-44
Identities = 78/115 (67%), Positives = 100/115 (86%)
Frame = +3
Query: 453 DKDTEEILADTLNVEVFRQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQVPL 632
D+ TEEI++D L VEVFRQTIAGN+LVGS+ A SN+GGLVHP+T+++DQ ELS+LL+VPL
Sbjct: 90 DQGTEEIISDVLGVEVFRQTIAGNILVGSFCAFSNKGGLVHPQTSVEDQAELSTLLEVPL 149
Query: 633 VAGTVNRGSDVVAAGMVVNDWCAFCGLDTTSTEISVIESVFQLNDAKPTAITSTM 797
AG++NRGS+VVAAGM VNDW AFCG DTT+TE+SV+ESVF+L D +P A+ + M
Sbjct: 150 AAGSINRGSEVVAAGMAVNDWAAFCGADTTATELSVVESVFRLRDGRPGALGADM 204
Score = 141 bits (342), Expect = 5e-34
Identities = 76/192 (39%), Positives = 120/192 (62%), Gaps = 13/192 (6%)
Frame = +3
Query: 90 MAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIG 269
MA RV+FEN++E+GVF++LTN YC++ GG+ENF+SVFE+ELA+ +PV+ S+GG RIIG
Sbjct: 1 MASRVRFENSSEIGVFARLTNAYCVLPDGGAENFFSVFESELADVVPVVRTSIGGTRIIG 60
Query: 270 RMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEE-------RLSALGNVI----- 413
RM VGNKNGLL+P +TTD ELQH++NSLP+ + + + R + GN++
Sbjct: 61 RMCVGNKNGLLLPHTTTDQELQHLKNSLPDQGTEEIISDVLGVEVFRQTIAGNILVGSFC 120
Query: 414 ACNDYVALVHPDLDKDTEEILADTLNVEVFRQTI-AGNVLVGSYTALSNRGGLVHPKTNI 590
A ++ LVHP + + L+ L V + +I G+ +V + A+++ T
Sbjct: 121 AFSNKGGLVHPQTSVEDQAELSTLLEVPLAAGSINRGSEVVAAGMAVNDWAAFCGADTTA 180
Query: 591 QDQDELSSLLQV 626
+ + S+ ++
Sbjct: 181 TELSVVESVFRL 192
>04_04_0108 -
22830485-22830706,22830817-22830954,22831091-22831355,
22831490-22831725,22831906-22832421,22834960-22835300,
22835453-22835459
Length = 574
Score = 32.3 bits (70), Expect = 0.46
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Frame = +3
Query: 117 NNEVGVFSKLTNTYCLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIGRMTVGNKNG 296
NNE+ FS NT NF + L+ P I G + VG G
Sbjct: 413 NNEMDDFSMPANTSANSPPPAPANFVRPLKRPLSSMTPTIILKDGNLKA----AVGASGG 468
Query: 297 LLVPSSTTDTELQH-IRNSLP-ENVKLQRVEERLSALGNVIACNDYVALV--HPDLDKDT 464
++P+ T + L H ++N P +V RV +L + NV+ ++ + H +LD T
Sbjct: 469 SMIPAGTMEVLLNHFVKNMDPLSSVMAPRVYHQL--IPNVVQYENWTTVTGDHFELDAAT 526
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/86 (23%), Positives = 41/86 (47%)
Frame = +3
Query: 30 ESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFEA 209
E+HH++ YII + K+ + ++ E F + + +C++A + N S+F+
Sbjct: 241 EAHHLI-YIIGWSLYHPVKLDGL--MHTHDEEARKFFRHSGVHCVLAPRYASNKLSIFKQ 297
Query: 210 ELAETIPVIHASVGGCRIIGRMTVGN 287
++ T+ H C I+ +GN
Sbjct: 298 QVVGTLFTHHQK---CVIVDTQVIGN 320
>10_08_0036 + 14325793-14326457,14326610-14328035
Length = 696
Score = 29.9 bits (64), Expect = 2.5
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 4/145 (2%)
Frame = +3
Query: 159 CLVAIGGSENFYSVFEAELAETIPVIHASVGGCRIIGRMTVGNKNGLLVPSSTTDTELQH 338
CL A G + L I ++ ++ R IG T N + + V + D E Q
Sbjct: 408 CLSASGDHQLHRLDSRQGLLAGIAQVNKAIKDARHIGDRT-SNIDVIKVQAGNLDEEAQR 466
Query: 339 IRNSLPENVKLQRVEERLSALGN----VIACNDYVALVHPDLDKDTEEILADTLNVEVFR 506
I+ +P N + VE LGN + A +Y ++ D D+ EI+ +N E
Sbjct: 467 IQELVPSNFNIIGVEVMHPQLGNRSYAIGAQQNYESMKTYLKDADSFEIVIAFVNSE--- 523
Query: 507 QTIAGNVLVGSYTALSNRGGLVHPK 581
+A + + + + R G +HP+
Sbjct: 524 GMLAYDCVWKFCISSTPRSGCLHPR 548
>04_03_0824 +
20086639-20087263,20087282-20087463,20087569-20087724,
20087867-20087989,20088079-20088247,20088384-20088466,
20088641-20088742,20089246-20089359,20089735-20089811,
20089884-20089962,20090060-20090128,20090235-20090410,
20090460-20090561,20090678-20090768,20090878-20090976,
20091141-20091326
Length = 810
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 504 RQTIAGNVLVGSYTALSNRGGLVHPKTNIQDQDELSSLLQV 626
R + A ++G A S+ GLVHP T+ Q +SS QV
Sbjct: 73 RPSAAAAAVLGEPVAASDDHGLVHPSTDFASQALVSSTQQV 113
>01_05_0329 -
21037980-21038378,21038517-21038737,21038827-21038905,
21039002-21039071,21039144-21039255,21039359-21039398,
21039482-21039676,21039925-21040044,21040684-21041106,
21042386-21042928
Length = 733
Score = 28.7 bits (61), Expect = 5.7
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Frame = +3
Query: 27 EESHHIVKYIIREKVKRKTKIMAVRVQFENNNEVGVFSKLTNTYCLVAIGGSENFYSVFE 206
E+ H +++ R K++ + E N VFS T+C + I S N + +
Sbjct: 475 EQQRHTFQFVSRNKLEVPVRHKKAPDALEMNTNSVVFSPKEQTHCNLEI-FSPNSKKIID 533
Query: 207 AELAETIPVIHA-SVGGCRIIGRMTVGNKNGLLVPSST 317
A E+ + +G C++ + ++ + PS T
Sbjct: 534 ASHYESYASLQQHPLGQCQVPNYWSAAGQSSFVHPSIT 571
>04_03_0916 + 20794240-20794246,20794585-20796545
Length = 655
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 243 SVGGCRIIGRMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIAC 419
S GGC + + + SS TD E HIR + E + Q V +R +G + AC
Sbjct: 244 SNGGCSVWHNELLNIRKNQCTGSSNTDGETFHIRLAAQE-LYSQEVNKRGMVIGVLSAC 301
>11_01_0438 - 3349506-3351239
Length = 577
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Frame = +3
Query: 201 FEAELAETIPVIHASVGGCRIIGRMTVGNKN---GLLVPSSTTDTELQHIRNSLPE--NV 365
FE A TIP ++ S +GR+ VG N G + + T TEL + LP +
Sbjct: 400 FEVLAASTIPRMYHSSATLDTLGRVLVGGSNPHVGYVFDNVTYPTELS-LEAFLPPYFDA 458
Query: 366 KLQRVEERLSALGNVIACNDYVAL 437
+L V RL A + + + A+
Sbjct: 459 RLDGVRPRLVAAPSEVGYGEAAAV 482
>04_03_0914 + 20788103-20789642,20790036-20790529
Length = 677
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 243 SVGGCRIIGRMTVGNKNGLLVPSSTTDTELQHIRNSLPENVKLQRVEERLSALGNVIACN 422
S GGC I + + SS TD E HIR + E + ++ +R+ +G VI+ +
Sbjct: 398 SNGGCSIWHNELLNIRKSQCSDSSNTDGEALHIRLA-AEELYSKKANKRVMVIGVVISAS 456
>03_01_0047 +
391689-392738,392832-392999,393091-393195,393529-393611,
393899-394364
Length = 623
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 790 DVIAVGLASFNWKTLSITEISVDVVSSPQNAHQSLTTIPAATTSL 656
++I V L S +W T+S T +S+ + S+ Q + I TSL
Sbjct: 24 NMICVILNSMSWVTVSSTVVSLTIASAGQRSSMMSIAIYLLATSL 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,329,825
Number of Sequences: 37544
Number of extensions: 484810
Number of successful extensions: 1297
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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