Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3g15
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0927 + 20871487-20871903,20872667-20872812,20873204-208733...    29   3.1  
05_05_0209 - 23282848-23284110                                         29   5.4  
10_02_0202 - 6770448-6770561,6771185-6771279,6771638-6771686,677...    28   9.4  

>04_03_0927 +
           20871487-20871903,20872667-20872812,20873204-20873301,
           20873378-20873572,20873670-20873797,20873892-20874050,
           20875119-20875223,20875449-20875559,20875653-20875790,
           20875909-20876091,20876362-20876517,20876615-20876738,
           20876820-20877030,20877614-20877729,20877828-20878053,
           20878218-20878311,20879198-20879275,20879822-20879971,
           20880086-20880292,20880584-20880788,20880990-20881096
          Length = 1117

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 492 KHHIIQQHVTKVHGLEQLHFVNYFMGFCGFERR 394
           K + I QH+ ++H   +L F+N F+ F G+  R
Sbjct: 735 KSYDISQHLHEIHESVRLAFLNSFLDFAGYLER 767


>05_05_0209 - 23282848-23284110
          Length = 420

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +1

Query: 235 FPYAALSYINVTLCTYTAMLVGY--MAXFNEFEYLQYWFLLSFL---MSXALNAPTL-WT 396
           FP A    + V      AML     MA     E+LQ+WF+LS L   ++ ALN   + WT
Sbjct: 235 FPSARARAVAVAGHLNRAMLAALVSMATILAVEFLQWWFMLSLLPEAIAVALNVAIMAWT 294


>10_02_0202 -
           6770448-6770561,6771185-6771279,6771638-6771686,
           6771795-6771843,6772035-6772228
          Length = 166

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 271 LCTYTAMLVGYMAXFNEFEYLQYWFLLSFLMSXALNAPTLWTA 399
           L  + A+++G       +    YW LL  L +  LN   +WTA
Sbjct: 50  LNAFGAIVLGAPIGIKYWAATTYWSLLMSLFTVVLNVSAIWTA 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,884,432
Number of Sequences: 37544
Number of extensions: 303667
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)