Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3g07
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...   161   9e-41
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   1.5  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    27   1.9  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    27   3.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   5.9  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   5.9  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.9  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   7.8  

>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score =  161 bits (391), Expect = 9e-41
 Identities = 70/102 (68%), Positives = 83/102 (81%)
 Frame = +2

Query: 128 GNAENGKKIFVQRCAQCHTVEAGGKHKVGPNLHGFFGRKTGQAAGFSYSDANKAKGITWN 307
           G+ + G  +F  RCAQCHTVE GG +KVGPNLHG FGRKTGQA GFSY++AN+ KGITW+
Sbjct: 6   GDEKKGASLFKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFSYTEANRDKGITWD 65

Query: 308 DDTLFEYLENPKKYIPGTKMVFAGLKKANERADLIAYLKSAT 433
           ++TLF YLENPKKYIPGTKM FAG KK  +R ++I YLK AT
Sbjct: 66  EETLFAYLENPKKYIPGTKMAFAGFKKPADRNNVITYLKKAT 107


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
 Frame = +3

Query: 213 DRIYMDSLAEKLARLQDSHTPMPIKLRALHGMTTLSLNILRIPRN----TSLEPRWCLLD 380
           D + +     K   + D  T      R  HG +  S+  L   +     + LE +  L D
Sbjct: 264 DNLVIAGCRNKSVLVYDLRTKKECVQRFYHGSSICSMQNLDFSQPKLLVSGLESKISLYD 323

Query: 381 SR------RQMSVLTLLPISNLLPSNFKVIENSIRSIFHNISGIYFL 503
            R      R  S+++ +  SNLL  N  +++N   SIF +    Y L
Sbjct: 324 CRFLQSKKRPQSIMSYMGHSNLLERNLALMKNENGSIFSSAGDDYVL 370


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = -2

Query: 688  SQHCQESINYITQYIMYQVHNMYSQTTTAND 596
            S  CQES+  + +Y ++ +  ++ +T++AN+
Sbjct: 1152 SNLCQESVALVERYCVHTLEYVFQKTSSANE 1182


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 303 GMTTLSLNILRIPRNTSLEPRWCLLDSRRQMSVLTLLPISNLL 431
           G  T SLN  R+ +  SL   WC +  R  +    + PI+++L
Sbjct: 416 GSITFSLNWSRLGQKISLPIMWCSVFDRSAVFWGLVFPITSIL 458


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +3

Query: 21  TIHVVSIKCLKFGDFGRPKKFGCYINYKN 107
           TI   S+ CL F     PK F C   YKN
Sbjct: 115 TIDFTSLPCLIFETLLNPKLFTCKNIYKN 143


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 294 PLALLASEYENPAAWPVFRPKNP 226
           PL LL + +++PA W V +  NP
Sbjct: 270 PLELLKTVFQSPAPWDVHQLYNP 292


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 417 ISNLLPSNFKVIENSIRSIFHNISGIYFL 503
           +S+L  + F+ I+N  +SI++   GI+F+
Sbjct: 165 LSSLAVNEFRTIQNISKSIWYTRLGIFFI 193


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 219 FGPTLCLPPASTVWHWAHRCTKIFFP 142
           +GP L + PAST+ +W    T+ F P
Sbjct: 891 WGPFLVIAPASTLHNWQQEITR-FVP 915


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,513
Number of Sequences: 5004
Number of extensions: 66030
Number of successful extensions: 178
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)