Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f24
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   0.64 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   0.64 
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    24   1.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.9  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   7.9  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   7.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   7.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   7.9  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = +2

Query: 521 KLPDPP-PHQQAPWGPV 568
           KLP PP PH Q P  PV
Sbjct: 734 KLPPPPHPHHQPPRNPV 750


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 11/17 (64%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = +2

Query: 521 KLPDPP-PHQQAPWGPV 568
           KLP PP PH Q P  PV
Sbjct: 626 KLPPPPHPHHQPPRNPV 642


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = +2

Query: 485 YNLINGLRIIC---SKLPDPPPHQQAPWGPVADWYHFTITMPEVFMNITIVLNETQHYD- 652
           Y+ IN L +I    + LP    H+     P      F++ +      +++ L      D 
Sbjct: 4   YSSINSLVLISKIFALLPVKKHHRLEKLVPCVYLTSFSVVLSLGSFIVSVYLTTKIDNDG 63

Query: 653 EAAALTRYWLGLYLPTAVNSMG 718
           E+ +L   WL LYL   + ++G
Sbjct: 64  ESISLASGWLDLYLGITIQTLG 85


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 385 KRSGLWYRVPHAHR 426
           K  G+W R+PH +R
Sbjct: 227 KVCGVWKRIPHDYR 240


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 347 SNFYWDLPPFQLF 309
           S+FYW+L P  +F
Sbjct: 918 SSFYWNLLPIAVF 930


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 347 SNFYWDLPPFQLF 309
           S+FYW+L P  +F
Sbjct: 918 SSFYWNLLPIAVF 930


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 254 ELENFEQWFKNNLSYSFSQKAEKVVN 331
           + ENF+Q+  NN S   +  +E   N
Sbjct: 142 QYENFQQYDNNNFSAEENSVSEPPAN 167


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
          beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 37 VVCCLLLIQSF 5
          VVCCLLL+ S+
Sbjct: 6  VVCCLLLMFSY 16


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 254 ELENFEQWFKNNLSYSFSQKAEKVVN 331
           + ENF+Q+  NN S   +  +E   N
Sbjct: 142 QYENFQQYDNNNFSAEENSVSEPPAN 167


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 254 ELENFEQWFKNNLSYSFSQKAEKVVN 331
           + ENF+Q+  NN S   +  +E   N
Sbjct: 142 QYENFQQYDNNNFSAEENSVSEPPAN 167


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,276
Number of Sequences: 336
Number of extensions: 3329
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)