Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f24
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.97 
SB_59656| Best HMM Match : GRIP (HMM E-Value=7.5)                      28   6.9  
SB_35065| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_20989| Best HMM Match : CRA_rpt (HMM E-Value=7.1)                   28   6.9  
SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_34618| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_52311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 533 PPPHQQAPWGPVADWYHFTITMPEVFMNITIVLNETQHYDEAAALTRY 676
           P  HQQ      + ++H TITMP  +   TI +    H++     T+Y
Sbjct: 100 PSRHQQNTITIPSQYHHNTITMPSQYHRNTIAIPSQYHHNTITTPTQY 147


>SB_59656| Best HMM Match : GRIP (HMM E-Value=7.5)
          Length = 186

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 388 RSGLWYRVPHAHRVLRTLQQHQRRVIPE 471
           R GLW     A R+    +QH RR++P+
Sbjct: 119 RGGLWSLTGPAERIFSKTEQHFRRLMPD 146


>SB_35065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 388 RSGLWYRVPHAHRVLRTLQQHQRRVIPE 471
           R GLW     A R+    +QH RR++P+
Sbjct: 234 RGGLWSLTGPAERIFSKTEQHFRRLMPD 261


>SB_20989| Best HMM Match : CRA_rpt (HMM E-Value=7.1)
          Length = 138

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +3

Query: 576 GTISQSQXXXXXXXXXXXXXKRSITTKLRPSRVTGSACICPRPSTRWAGTGRQA 737
           GT+++               +R++T + R S+ T    + P P+ RW    R A
Sbjct: 44  GTLAERHAPQAPRSGPGHDKRRTVTLRARESKPTFPPPLIPSPNRRWRAPARSA 97


>SB_50350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +3

Query: 576 GTISQSQXXXXXXXXXXXXXKRSITTKLRPSRVTGSACICPRPSTRWAGTGRQA 737
           GT+++               +R++T + R S+ T    + P P+ RW    R A
Sbjct: 87  GTLAERHAPQAPRSGPGHDKRRTVTVRARESKPTFPPPLKPSPNRRWRAPARSA 140


>SB_34618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 433 AIPYERVAHGTKVRNACPRTQIVKYRVVVPISIGIYHLFSFLAKR 299
           AIP   +  G K +N CP    +   ++V  S GI+     L +R
Sbjct: 44  AIPIAMIVIGAKYKNQCPIEDKIPIYLIVGGSFGIFRNLVSLCQR 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,186,679
Number of Sequences: 59808
Number of extensions: 409891
Number of successful extensions: 1544
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)