Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f21
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   0.69 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   2.1  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    24   4.8  
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    24   6.4  
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom...    24   6.4  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    23   8.5  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 0.69
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 169  LLNKMYLXLLITFFLRSD 116
            LL K YL L+  FFLRSD
Sbjct: 1760 LLGKQYLYLMDNFFLRSD 1777


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 266 NEHKICQFGRVXHQIPHGRATRPLGLLDLSV 174
           N +K+C FG   H IP  +       L+  +
Sbjct: 178 NSYKLCDFGSACHPIPGAKTAAEAKQLEYDI 208


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 263 EHKICQFGRVXHQIPHGRATRPLGLLDLS 177
           ++K C FG     + +G+   P+GL D++
Sbjct: 104 KYKKCDFGHCPRVLCNGQPMLPVGLSDIA 132


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 284 LFSVIKNEHKICQFGRVXHQIPHGR 210
           +FS +   +K+CQFGR+   I HG+
Sbjct: 38  VFSKLIIYNKVCQFGRI--HIFHGK 60


>SPAC3C7.09 |set8||lysine methyltransferase Set8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 429

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 165 NSWYTKIKQPEWPSSPAMW-----DLVXNTPELADFVFIFDHTEKMGKK 296
           +SW +KI  P+W  + A++     +     P LA  + + +H+ K   K
Sbjct: 157 DSWPSKITLPKWVHADALFHSRCLESPFKDPVLAPVIDLCNHSSKSNAK 205


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 254 ICQFGRVXHQIPHGRATRPLGLLDLSVPTVKQNVFXAVNHL 132
           IC FG +   +     +  L LLDL +P  K+N+   V  L
Sbjct: 578 ICAFGLIG-VLSSWLKSLFLSLLDLVIPNPKENITLPVQSL 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,250,091
Number of Sequences: 5004
Number of extensions: 21350
Number of successful extensions: 52
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)