Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f21
         (319 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   1.4  
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760...    27   2.4  
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300...    27   4.2  
06_02_0190 + 12832559-12832916,12833012-12833092,12833262-12833305     25   9.7  
04_04_0907 + 29304830-29305030,29305296-29305547                       25   9.7  

>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 174 YTKIKQPEWPSSPAMWDLVXNTPELADFVFI-FDHTEK 284
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


>11_02_0036 +
           7599646-7599950,7600106-7600145,7600403-7600437,
           7600789-7601189,7601281-7601361,7601451-7601536
          Length = 315

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 290 THLFSVIKNEHKICQFGRVXHQIP 219
           TH F  +K E+ IC F R    IP
Sbjct: 198 THSFDAMKKEYYICGFARSIESIP 221


>05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,
            3003571-3004442,3004592-3004773,3005206-3005295,
            3005388-3005675,3005776-3005997,3006053-3006133,
            3006634-3006861
          Length = 1475

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 156  ILFNSWYTKIKQPEWPSSPAMW 221
            +L + W  +IK PEW    ++W
Sbjct: 1346 VLCSKWQNEIKDPEWHPFKSVW 1367


>06_02_0190 + 12832559-12832916,12833012-12833092,12833262-12833305
          Length = 160

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 281 FSVIKNEHKICQFGRVXHQIP 219
           F   KNEH +C F +    IP
Sbjct: 60  FDAAKNEHYVCGFAKSVESIP 80


>04_04_0907 + 29304830-29305030,29305296-29305547
          Length = 150

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 123 RKKKVINSXKYILFNSWYTKIKQPEWPSSPAMW 221
           RK+ V N   Y+  +    +   PEWPS+PA +
Sbjct: 117 RKETVHNWRDYLRLHCHPLEEFVPEWPSNPAQF 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,137,027
Number of Sequences: 37544
Number of extensions: 142431
Number of successful extensions: 291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)