Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f20
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.20 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   0.47 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    24   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.5  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    21   7.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 403 CGGDYADFQYLKDIIQQKIIDE 468
           C GD  D   ++DI+ Q ++DE
Sbjct: 108 CPGDLYDSDIIQDIVPQNVLDE 129


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 559 DPSYSSCCRGHESTSSAENGA*AGDHLQHSSHQ 461
           DPS SSC +G  S++     A +     H  HQ
Sbjct: 132 DPSVSSCHQGFSSSTWCNYSAYSSASRHHVDHQ 164


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 211 PSRHGVQDFTAHSASPITTTTTVIGVKFDKGC 306
           PS+HG+ D TA    P   T  +  + +++ C
Sbjct: 267 PSKHGLNDATAAPGEPGPYTVNLGSLGYNEIC 298


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +1

Query: 313  AGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKD 441
            AG+   + G LA +  C  V+K    ++    G    + YL+D
Sbjct: 2092 AGEETRARGFLAYYEICTNVIKKGWKVVRDRRGRIGPYAYLRD 2134


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -1

Query: 120 HKSHCYII 97
           HK HCY++
Sbjct: 36  HKEHCYVL 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,203
Number of Sequences: 336
Number of extensions: 2660
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)