Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3f20
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 110 2e-25
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 41 1e-04
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 33 0.023
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 29 0.50
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 28 0.87
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 28 0.87
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|... 27 1.5
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 3.5
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 25 8.1
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 110 bits (264), Expect = 2e-25
Identities = 49/112 (43%), Positives = 75/112 (66%)
Frame = +1
Query: 247 SASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADF 426
+ PI T ++V+ +KF G +IA D L SYGSLARF D R+ KV D ++G GGD +D+
Sbjct: 36 TVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDY 95
Query: 427 QYLKDIIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVV 582
Q ++ ++++ I E GDG L+P +H +L++VLY +R+K+DP WN +V
Sbjct: 96 QQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIV 147
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 41.1 bits (92), Expect = 1e-04
Identities = 29/91 (31%), Positives = 43/91 (47%)
Frame = +1
Query: 274 TVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQ 453
T + + D ++AGDT G R PRV +V D +++G G AD L IQQ
Sbjct: 15 TTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQ 74
Query: 454 KIIDESCVGDGLQLKPRSLHCWLTRVLYNKR 546
+ ID ++ +S C + +LY KR
Sbjct: 75 R-IDLYHDNHERKMSAQSCACMVRTLLYGKR 104
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 33.5 bits (73), Expect = 0.023
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 262 TTTTTVIGVKFDKGCVIAG-DTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 438
+T TT++GV K C++ G DT + G + ++C ++ ++ I G AD +++
Sbjct: 33 STGTTIVGV-IAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVT 91
Query: 439 DIIQQKI 459
+I I
Sbjct: 92 SMISSNI 98
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 29.1 bits (62), Expect = 0.50
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 146 CGKTDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAPSRPPQRSLELSLTRD 304
CG+T L+H ++ E Q LHP V Q Q+ PPQ+ +L + D
Sbjct: 49 CGETG--LKHSLVHFE---QTLHPIVVTIARQPKQKINDEPPQKITKLEIRED 96
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 0.87
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 136 PTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTA-HSASPITTT 270
P+PL P+P F N P AS P+ TA SASP+ +T
Sbjct: 364 PSPLQNTNPAPSTFPN-PSVASPAFPNSSTSNPSTAPASASPLAST 408
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 28.3 bits (60), Expect = 0.87
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 175 FYNFPGNASTIAPSRHGVQDFTAHSASPITTTTTVI 282
+YN G +S + + HG+ DF +H + T T I
Sbjct: 254 YYNNDGASSWVFTADHGMSDFGSHGDGNLDNTRTPI 289
>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +1
Query: 421 DFQYLKDIIQQKIIDESCVGDGLQ--LKPRSLHCWLTRVLYNKRSKM 555
D +LKD+ QQKI ++ + +Q +KP C + R LY+K ++
Sbjct: 31 DADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCI-RQLYSKSDEL 76
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 304 CVIAGDTLGSYGSLARFRDCPRVMKVNDLILL 399
C AG +LG Y +L+ D + + DL+ L
Sbjct: 1822 CAFAGHSLGEYSALSAMGDVLSIEALVDLVFL 1853
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 8.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 477 WRWSPAQAPFSALLVDSC 530
WR++PA + LL+D C
Sbjct: 76 WRFTPASDKYDYLLIDRC 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,041
Number of Sequences: 5004
Number of extensions: 43652
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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