Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3f20
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 95 3e-20
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 31 0.79
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 31 0.79
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 31 0.79
Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 7.4
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 27 7.4
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 9.7
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 95.1 bits (226), Expect = 3e-20
Identities = 44/117 (37%), Positives = 76/117 (64%)
Frame = +1
Query: 232 DFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGG 411
D + +P T T+VI +++ G V+ D + SYG +AR+++ R KVND +L+ GG
Sbjct: 5 DEVQRTLNPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGG 64
Query: 412 DYADFQYLKDIIQQKIIDESCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVV 582
D+ADF +L+++I+++++ + P++LH +LT +LY KR KM+P+WN+ VV
Sbjct: 65 DHADFHWLQNVIERQVLLWKRFDQ--DIGPKALHGYLTSLLYAKRCKMNPVWNTLVV 119
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 30.7 bits (66), Expect = 0.79
Identities = 25/82 (30%), Positives = 36/82 (43%)
Frame = +1
Query: 196 ASTIAPSRHGVQDFTAHSASPITTTTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVM 375
AST +P Q A A + T+I ++ G V+ D L S L PR+
Sbjct: 12 ASTFSPDGRIFQVEYAQKA--VDNAGTMIAIRGKNGVVVVADKLIS-SKLYTDNANPRMF 68
Query: 376 KVNDLILLGCGGDYADFQYLKD 441
VND + + G+Y D LK+
Sbjct: 69 NVNDNVGVAVAGNYPDGFALKN 90
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 30.7 bits (66), Expect = 0.79
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 265 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 441
+T + G F ++A DT + + RD ++ +ND I+L G Y D LK
Sbjct: 53 STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109
Query: 442 IIQQKI 459
++Q ++
Sbjct: 110 VLQSRL 115
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 30.7 bits (66), Expect = 0.79
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +1
Query: 265 TTTTVIGVKFDKGCVIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKD 441
+T + G F ++A DT + + RD ++ +ND I+L G Y D LK
Sbjct: 53 STCAISGENF---AIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKK 109
Query: 442 IIQQKI 459
++Q ++
Sbjct: 110 VLQSRL 115
>Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical
protein C06C3.3 protein.
Length = 576
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 155 TDRRLEHFIIFLEMLPQLLHPGTVYRILQLTQRAP 259
T ++ +H+I+FL+ L LL T R L TQ P
Sbjct: 37 TRKQFKHWIVFLDALTDLLRTATAVRRLFTTQGIP 71
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 121 GDTMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAH 246
G+ PTP + F+ P +A P H +DFT+H
Sbjct: 438 GERSTPTPQEEEEEMMRNFFPRPVSAQAYQPPGHQPEDFTSH 479
>Z73912-8|CAA98148.1| 1016|Caenorhabditis elegans Hypothetical
protein ZK524.4 protein.
Length = 1016
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 533 RTRVNQQCRERGLSWRPSPTQL 468
R+ +N +CR R SWR P +
Sbjct: 379 RSNINSRCRSRSNSWRARPCSI 400
>Z72517-7|CAA96698.1| 1016|Caenorhabditis elegans Hypothetical
protein ZK524.4 protein.
Length = 1016
Score = 27.5 bits (58), Expect = 7.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 533 RTRVNQQCRERGLSWRPSPTQL 468
R+ +N +CR R SWR P +
Sbjct: 379 RSNINSRCRSRSNSWRARPCSI 400
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 157 GPSPGAFYNFPGNASTIAPSRHG 225
GPSPG N P N S + PS G
Sbjct: 1396 GPSPGPSPNEPSNPSILGPSTGG 1418
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 199 STIAPSRHGVQDFTAHSASPITTTTTVI 282
STIAPS GV ++ S+SP +T TT I
Sbjct: 395 STIAPSTQGVPT-SSKSSSPNSTPTTTI 421
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,021,106
Number of Sequences: 27780
Number of extensions: 263958
Number of successful extensions: 778
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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