Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f20
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   6.7  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.9  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   8.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 210 SIQARCTGFYSSLSEPHH 263
           S ++ C+G  +SL+E HH
Sbjct: 495 STESTCSGEVASLTEYHH 512


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 524 VNQQCRERGLSWRPSPTQ 471
           V ++C ERG+ + P P +
Sbjct: 766 VQKKCEERGILFMPIPNR 783


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 246 LSEPHHDHHNG 278
           L   HH HHNG
Sbjct: 19  LESVHHCHHNG 29


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 430 YLKDIIQQKIIDESCVGDGLQLKPRSLHCWLT 525
           Y  D ++++++ +S       L   +LHCW T
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWAT 262


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 430 YLKDIIQQKIIDESCVGDGLQLKPRSLHCWLT 525
           Y  D ++++++ +S       L   +LHCW T
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWAT 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,285
Number of Sequences: 438
Number of extensions: 2842
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)