Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3f19
(350 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes ... 127 6e-29
UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127; Euka... 122 2e-27
UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4; Eukary... 111 2e-24
UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5; Magnol... 105 2e-22
UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protei... 87 6e-17
UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of cy... 82 2e-15
UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1; O... 80 9e-15
UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n... 80 1e-14
UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia... 79 3e-14
UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1; Guilla... 76 1e-13
UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative; n... 71 4e-12
UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1; Enceph... 67 9e-11
UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2; Neoptera... 65 3e-10
UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7; T... 63 1e-09
UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45; root|... 58 4e-08
UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1; Methan... 53 1e-06
UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5; Thermo... 50 1e-05
UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1; Archae... 50 1e-05
UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11; Eurya... 48 4e-05
UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1; Nanoar... 48 6e-05
UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus ... 47 8e-05
UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum... 47 1e-04
UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum ... 46 2e-04
UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4; Haloba... 45 3e-04
UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured... 43 0.002
UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum... 42 0.004
UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3; Sulfol... 40 0.009
UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropy... 40 0.016
UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal ... 37 0.083
UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6; Methan... 37 0.083
UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;... 36 0.14
UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 36 0.14
UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32; Bacter... 35 0.44
UniRef50_Q53K43 Cluster: Retrotransposon protein, putative, uncl... 34 0.58
UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12; Bacter... 34 0.77
UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4; Thermo... 34 0.77
UniRef50_A2AX70 Cluster: Gustatory receptor candidate 8; n=1; Tr... 33 1.0
UniRef50_Q0PLZ7 Cluster: Putative regulatory protein; n=1; Kitas... 33 1.3
UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiel... 32 2.4
UniRef50_Q1AU63 Cluster: 50S ribosomal protein L13; n=3; Bacteri... 32 2.4
UniRef50_Q2VF30 Cluster: Polyprotein; n=1; Atlantic salmon swim ... 31 4.1
UniRef50_Q621K4 Cluster: Putative uncharacterized protein CBG024... 31 5.4
UniRef50_Q5CT98 Cluster: Putative ABC transporter with 2x AAA an... 31 5.4
UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4; Entamoeba|... 31 5.4
UniRef50_Q67JX6 Cluster: 50S ribosomal protein L13; n=59; Bacter... 31 5.4
UniRef50_Q9X8T0 Cluster: Putative transmembrane protein; n=2; St... 31 7.2
UniRef50_Q1GNA9 Cluster: Senescence marker protein-30; n=1; Sphi... 30 9.5
UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;... 30 9.5
UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1; Arabido... 30 9.5
>UniRef50_Q1HR63 Cluster: 60S ribosomal protein L13a; n=2; Aedes
aegypti|Rep: 60S ribosomal protein L13a - Aedes aegypti
(Yellowfever mosquito)
Length = 236
Score = 127 bits (306), Expect = 6e-29
Identities = 55/86 (63%), Positives = 69/86 (80%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG+FFRNK+K +++LRKRCNVNPARGPF FRAPS++LWK VRGM+PHKT+RG N L+RL+
Sbjct: 46 SGHFFRNKIKFLAYLRKRCNVNPARGPFHFRAPSRMLWKAVRGMVPHKTKRGHNALKRLK 105
Query: 183 TYXGCPPPFDNRRR--VVSACCSTCL 254
Y G P PFD ++R V +A CL
Sbjct: 106 VYEGIPSPFDRQKRLCVPTAMRQLCL 131
Score = 63.3 bits (147), Expect = 1e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 345
VP A+R CL+P R +C VGR++HE+GWKYRDVV LE
Sbjct: 122 VPTAMRQLCLRPDRKFCDVGRVAHEVGWKYRDVVNNLE 159
>UniRef50_Q9VNE9 Cluster: 60S ribosomal protein L13A; n=127;
Eukaryota|Rep: 60S ribosomal protein L13A - Drosophila
melanogaster (Fruit fly)
Length = 205
Score = 122 bits (294), Expect = 2e-27
Identities = 52/76 (68%), Positives = 64/76 (84%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG+F+RNK+K +++LRKRCNVNPARGPF FRAPS+I +K VRGMIPHKT+RG+ L RLR
Sbjct: 46 SGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLR 105
Query: 183 TYXGCPPPFDNRRRVV 230
+ G P P+D RRRVV
Sbjct: 106 VFDGIPSPYDKRRRVV 121
Score = 58.8 bits (136), Expect = 2e-08
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 345
VP A+RV L+ R YC VGRLSHE+GW Y+DV++ LE
Sbjct: 122 VPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLE 159
>UniRef50_P93099 Cluster: 60S ribosomal protein L13a; n=4;
Eukaryota|Rep: 60S ribosomal protein L13a - Cyanophora
paradoxa
Length = 200
Score = 111 bits (268), Expect = 2e-24
Identities = 46/76 (60%), Positives = 59/76 (77%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG+ FRNKLK +FL+KR N NP RGPF FR+P++ILW+T+RGMIPHKT RG L RL+
Sbjct: 43 SGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLK 102
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D +R+V
Sbjct: 103 AFEGVPPPYDKMKRMV 118
Score = 54.4 bits (125), Expect = 5e-07
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
+P ALRV LKPGR +C +GRL+ E+GW++ D+V +LE+
Sbjct: 119 IPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEE 157
>UniRef50_Q6RH10 Cluster: 60S ribosomal protein L13a; n=5;
Magnoliophyta|Rep: 60S ribosomal protein L13a - Capsicum
annuum (Bell pepper)
Length = 220
Score = 105 bits (253), Expect = 2e-22
Identities = 45/76 (59%), Positives = 55/76 (72%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG R K+K + FLRKR N P+ GP FRAPSKILW+T+RGMIPHKT+RG L RL+
Sbjct: 49 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSKILWRTIRGMIPHKTKRGAAALARLK 108
Query: 183 TYXGCPPPFDNRRRVV 230
Y G PPP+D +R+V
Sbjct: 109 VYEGVPPPYDKIKRMV 124
Score = 48.4 bits (110), Expect = 3e-05
Identities = 18/39 (46%), Positives = 28/39 (71%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
+P AL+V L+ G YC +G+LS E+GW + D +++LED
Sbjct: 125 IPDALKVLRLQAGHKYCLLGKLSSEVGWNHYDTIKELED 163
>UniRef50_Q245E7 Cluster: Ribosomal protein L13 containing protein;
n=16; Alveolata|Rep: Ribosomal protein L13 containing
protein - Tetrahymena thermophila SB210
Length = 270
Score = 87.4 bits (207), Expect = 6e-17
Identities = 38/76 (50%), Positives = 50/76 (65%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG+ FRN++K FL K N NP RG FRAPS+I W+ VRGM+PHKT +G L RL+
Sbjct: 115 SGSLFRNRVKFSEFLNKWMNHNPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLK 174
Query: 183 TYXGCPPPFDNRRRVV 230
+ G P P+D ++ V
Sbjct: 175 IFEGIPTPYDRVKKQV 190
Score = 31.9 bits (69), Expect = 3.1
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 241 ALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
AL+V L+ R C +G LS +GW + ++ KLE+
Sbjct: 194 ALKVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEE 229
>UniRef50_A4S5V9 Cluster: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit; n=2;
Ostreococcus|Rep: Ribosomal protein L13a, component of
cytosolic 80S ribosome and 60S large subunit -
Ostreococcus lucimarinus CCE9901
Length = 199
Score = 82.2 bits (194), Expect = 2e-15
Identities = 33/76 (43%), Positives = 46/76 (60%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG R ++ + KR N NP +GP+ + +PS++ WKTVRGM+PHKT RG R +
Sbjct: 42 SGGMVRRRMAHDRYKNKRMNTNPKKGPYHYTSPSRLFWKTVRGMLPHKTVRGAAAFERFK 101
Query: 183 TYXGCPPPFDNRRRVV 230
Y G P P+D +R V
Sbjct: 102 AYEGIPAPYDKVKRAV 117
Score = 38.7 bits (86), Expect = 0.027
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 345
VP AL+V L G +C +G +IGWK+ +V++LE
Sbjct: 118 VPEALKVLRLGEGHRFCVLGDFCEQIGWKHGAIVKELE 155
>UniRef50_Q75J15 Cluster: Putative ribosomal protein L13a; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
ribosomal protein L13a - Oryza sativa subsp. japonica
(Rice)
Length = 172
Score = 80.2 bits (189), Expect = 9e-15
Identities = 33/59 (55%), Positives = 43/59 (72%)
Frame = +3
Query: 54 RCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRRRVV 230
R N P+ GP FR+P+KILW+TVRGMIPHKT+RG+ L RL+ Y PP+D +R+V
Sbjct: 40 RMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMV 98
Score = 48.0 bits (109), Expect = 4e-05
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVR 336
+P AL+V L+PG YC +G+LS E+GW Y D +R
Sbjct: 99 IPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 133
>UniRef50_UPI0000EB39CE Cluster: UPI0000EB39CE related cluster; n=1;
Canis lupus familiaris|Rep: UPI0000EB39CE UniRef100
entry - Canis familiaris
Length = 172
Score = 79.8 bits (188), Expect = 1e-14
Identities = 32/49 (65%), Positives = 41/49 (83%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKT 149
SGNF+RNKLK ++FL K+ N NP+RGP+ F+APS+I W T RGM+PHKT
Sbjct: 43 SGNFYRNKLKYLAFLCKQMNTNPSRGPYRFQAPSRIFWWTARGMLPHKT 91
Score = 44.4 bits (100), Expect = 5e-04
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +1
Query: 244 LRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
L+V LKP R + ++GRL+H++GWKY+ V LE+
Sbjct: 93 LKVVRLKPTRKFAYLGRLAHKVGWKYQAVTATLEE 127
>UniRef50_Q7R0D6 Cluster: GLP_608_8346_8939; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_608_8346_8939 - Giardia lamblia ATCC
50803
Length = 197
Score = 78.6 bits (185), Expect = 3e-14
Identities = 42/89 (47%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG F K + + KR N N RGPF FRAP++I+ +T+RGMIP+KT RG + + RLR
Sbjct: 41 SGAFRDVKAHYLKKMHKRTNFNHLRGPFHFRAPAEIVRRTIRGMIPYKTVRGSDAMSRLR 100
Query: 183 TYXGCPPPFDNRRRVV--SACCSTCLLSE 263
Y G PP +RVV SA CL E
Sbjct: 101 VYDGIPPCCARYKRVVCPSAMAYLCLRPE 129
Score = 45.2 bits (102), Expect = 3e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 235 PAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 345
P+A+ CL+P R C VGR++HEIGW++ V + E
Sbjct: 118 PSAMAYLCLRPERRRCEVGRVAHEIGWQHAADVERYE 154
>UniRef50_Q98RZ9 Cluster: 60s ribosomal protein L13A; n=1;
Guillardia theta|Rep: 60s ribosomal protein L13A -
Guillardia theta (Cryptomonas phi)
Length = 194
Score = 76.2 bits (179), Expect = 1e-13
Identities = 33/74 (44%), Positives = 47/74 (63%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
+G RN K S +K+ N NP RGPF F++PSKIL++T++ MIPHKT RG L+ L+
Sbjct: 41 TGKLGRNVNKYKSIFKKKTNTNPRRGPFHFKSPSKILYQTIKRMIPHKTMRGSKALKNLK 100
Query: 183 TYXGCPPPFDNRRR 224
+ G P F ++
Sbjct: 101 IFEGLPRIFSKIKK 114
>UniRef50_Q4Q3B9 Cluster: 60S ribosomal protein L13a, putative;
n=10; Trypanosomatidae|Rep: 60S ribosomal protein L13a,
putative - Leishmania major
Length = 222
Score = 71.3 bits (167), Expect = 4e-12
Identities = 32/67 (47%), Positives = 41/67 (61%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
+G RNK+K + +LRKR NP +GPF RAPS + +TVR M+P T+RG L L
Sbjct: 62 AGTEIRNKIKYLQYLRKRKLTNPTKGPFHHRAPSDVFVRTVRSMLPRYTKRGMKALNSLV 121
Query: 183 TYXGCPP 203
Y G PP
Sbjct: 122 AYEGIPP 128
Score = 38.3 bits (85), Expect = 0.036
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 345
+P A R C + R Y +G + +GWKY DVV LE
Sbjct: 139 IPRAQRHVCYRSERPYTVLGNMCKHVGWKYSDVVANLE 176
>UniRef50_Q8SS16 Cluster: 60S RIBOSOMAL PROTEIN L13A; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13A
- Encephalitozoon cuniculi
Length = 198
Score = 66.9 bits (156), Expect = 9e-11
Identities = 34/78 (43%), Positives = 41/78 (52%)
Frame = +3
Query: 6 GNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRT 185
G+ R K +L KRC VNP RGPF FR P L K +R MI +K RGK + RL T
Sbjct: 45 GSLERAMDKFKQYLNKRCLVNPRRGPFHFREPRMHLAKIIRRMISYKKPRGKAAMSRLAT 104
Query: 186 YXGCPPPFDNRRRVVSAC 239
Y G P + + R C
Sbjct: 105 YEGIPRELEGQPRYKVTC 122
>UniRef50_Q4GXI8 Cluster: Ribomsomal protein L13Ae; n=2;
Neoptera|Rep: Ribomsomal protein L13Ae - Cicindela
campestris (Green tiger beetle)
Length = 78
Score = 65.3 bits (152), Expect = 3e-10
Identities = 24/33 (72%), Positives = 28/33 (84%)
Frame = +1
Query: 247 RVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 345
R+ CLKPGR YCHVGRLSHE+GWKY+ V+ LE
Sbjct: 1 RIMCLKPGRKYCHVGRLSHEVGWKYQKVIESLE 33
>UniRef50_A2DZ26 Cluster: Ribosomal protein L13, putative; n=7;
Trichomonas vaginalis G3|Rep: Ribosomal protein L13,
putative - Trichomonas vaginalis G3
Length = 200
Score = 62.9 bits (146), Expect = 1e-09
Identities = 31/75 (41%), Positives = 41/75 (54%)
Frame = +3
Query: 42 FLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRR 221
FL K N NP GPF RAP +I + VRGMIP+KT RG + L+ Y G P + + +
Sbjct: 55 FLNKTTNSNPRDGPFHQRAPHEIFARAVRGMIPYKTHRGADAFANLQCYEGIPAKYVSYK 114
Query: 222 RVVSACCSTCLLSET 266
R+V C+ T
Sbjct: 115 RLVIPHALRCVSIHT 129
Score = 36.7 bits (81), Expect = 0.11
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
+P ALR + R +GRLS +GWKY +VV +LE+
Sbjct: 118 IPHALRCVSIHTDRPTTKLGRLSTTMGWKYGNVVAQLEE 156
>UniRef50_O59300 Cluster: 50S ribosomal protein L13P; n=45;
root|Rep: 50S ribosomal protein L13P - Pyrococcus
horikoshii
Length = 142
Score = 58.0 bits (134), Expect = 4e-08
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = +3
Query: 54 RCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRR 221
R NP RGPF + +I+ +T+RGM+P KT+RG+ RRL+ Y G P F +++
Sbjct: 56 RTLTNPRRGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQ 111
>UniRef50_Q8TVB6 Cluster: 50S ribosomal protein L13P; n=1;
Methanopyrus kandleri|Rep: 50S ribosomal protein L13P -
Methanopyrus kandleri
Length = 159
Score = 53.2 bits (122), Expect = 1e-06
Identities = 26/61 (42%), Positives = 37/61 (60%)
Frame = +3
Query: 18 RNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGC 197
+N +K +L+K +P +GPF R P I + VRGM+P KT+RG+ +RLR Y G
Sbjct: 56 KNTIK-EEWLQKIQRGDPKKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGT 114
Query: 198 P 200
P
Sbjct: 115 P 115
>UniRef50_Q8ZYQ1 Cluster: 50S ribosomal protein L13P; n=5;
Thermoproteaceae|Rep: 50S ribosomal protein L13P -
Pyrobaculum aerophilum
Length = 187
Score = 50.0 bits (114), Expect = 1e-05
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +3
Query: 54 RCNVNPAR-GPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRRRVV 230
R + NP + GP R P ++ + VRGM+P K+E G++ L+RLR Y P R+R+V
Sbjct: 76 RTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIPIEIMQRKRLV 135
>UniRef50_O29137 Cluster: 50S ribosomal protein L13P; n=1;
Archaeoglobus fulgidus|Rep: 50S ribosomal protein L13P -
Archaeoglobus fulgidus
Length = 156
Score = 50.0 bits (114), Expect = 1e-05
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +3
Query: 75 RGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNR 218
+GP+ R P +I +TVRGM+P K+ RG++ RRLR + G P R
Sbjct: 75 KGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGR 122
>UniRef50_Q8PW45 Cluster: 50S ribosomal protein L13P; n=11;
Euryarchaeota|Rep: 50S ribosomal protein L13P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 140
Score = 48.0 bits (109), Expect = 4e-05
Identities = 18/41 (43%), Positives = 29/41 (70%)
Frame = +3
Query: 78 GPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCP 200
GP+ + P +IL +T+RGM+P+K RG++ + RL+ Y G P
Sbjct: 62 GPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVP 102
>UniRef50_Q74ND7 Cluster: 50S ribosomal protein L13P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L13P -
Nanoarchaeum equitans
Length = 162
Score = 47.6 bits (108), Expect = 6e-05
Identities = 18/51 (35%), Positives = 31/51 (60%)
Frame = +3
Query: 75 RGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRRRV 227
+GPF + P IL + +RGM+P KT RG+ L+ ++ Y G P ++ ++
Sbjct: 65 KGPFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVPEELKDKPKL 115
>UniRef50_A7DRR6 Cluster: Ribosomal protein L13; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L13
- Candidatus Nitrosopumilus maritimus SCM1
Length = 154
Score = 47.2 bits (107), Expect = 8e-05
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 42 FLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPH-KTERGKNXLRRLRTYXGCPPPFDNR 218
FL +NP GP +R P I+ K +R M+P+ + GK ++RLR Y G P +
Sbjct: 64 FLEINSIINPKHGPVHYRRPDTIITKMIRQMLPYDRKPSGKESIKRLRAYIGSPKELKSL 123
Query: 219 RRV 227
++
Sbjct: 124 EKI 126
>UniRef50_A0RXP5 Cluster: Ribosomal protein L13; n=1; Cenarchaeum
symbiosum|Rep: Ribosomal protein L13 - Cenarchaeum
symbiosum
Length = 139
Score = 46.8 bits (106), Expect = 1e-04
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +3
Query: 42 FLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCP 200
FL+ ++P GP+ R P I+ + +RGM+P K GK RLR Y G P
Sbjct: 50 FLKIASIIHPEHGPYHPRRPDTIMTRMIRGMLPRKKPSGKAAHSRLRAYIGSP 102
>UniRef50_A7D2Q7 Cluster: Ribosomal protein L13; n=1; Halorubrum
lacusprofundi ATCC 49239|Rep: Ribosomal protein L13 -
Halorubrum lacusprofundi ATCC 49239
Length = 149
Score = 46.0 bits (104), Expect = 2e-04
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = +3
Query: 21 NKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCP 200
N+ M R + GP+ + P +I + +RGM+P+KTE G+ L +R Y G P
Sbjct: 49 NEEATMETYHTRAELGSDSGPYYPKRPDRIFKRAIRGMLPYKTEDGREALSNVRVYVGNP 108
>UniRef50_P29198 Cluster: 50S ribosomal protein L13P; n=4;
Halobacteriaceae|Rep: 50S ribosomal protein L13P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 145
Score = 45.2 bits (102), Expect = 3e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 51 KRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCP 200
KR ++ G F + P I +T+RGM+PHK +RG+ +R Y G P
Sbjct: 59 KRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNP 108
>UniRef50_Q2Q0G5 Cluster: Ribosomal protein L13P; n=1; uncultured
organism HF70_19B12|Rep: Ribosomal protein L13P -
uncultured organism HF70_19B12
Length = 161
Score = 42.7 bits (96), Expect = 0.002
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +3
Query: 33 LMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPH-KTERGKNXLRRLRTYXGCP 200
L + RK +P +GPF R P IL +TVRGM+P+ K G+ ++ LR G P
Sbjct: 57 LADYDRKYKLNHPRKGPFFPRMPDMILKRTVRGMLPYQKKSSGRQAVKDLRVMIGTP 113
>UniRef50_A1RWV8 Cluster: Ribosomal protein L13; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L13 - Thermofilum
pendens (strain Hrk 5)
Length = 154
Score = 41.5 bits (93), Expect = 0.004
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 66 NPA-RGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRRRV 227
NP RGP + P ++ + VRGM+P + G++ L+RL Y G P + N + V
Sbjct: 67 NPELRGPKYPKTPDRLFKRMVRGMLPMEKTIGRDSLKRLTVYVGLPDEYRNAKLV 121
>UniRef50_P95991 Cluster: 50S ribosomal protein L13P; n=3;
Sulfolobaceae|Rep: 50S ribosomal protein L13P -
Sulfolobus solfataricus
Length = 149
Score = 40.3 bits (90), Expect = 0.009
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +3
Query: 93 RAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRR 221
R+P I+ +T+RGM+P K+ +G+ L+ ++ Y G P F+ R+
Sbjct: 78 RSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQ 119
>UniRef50_Q9YB50 Cluster: 50S ribosomal protein L13P; n=1; Aeropyrum
pernix|Rep: 50S ribosomal protein L13P - Aeropyrum
pernix
Length = 155
Score = 39.5 bits (88), Expect = 0.016
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 93 RAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRRRV 227
R P ++ VRGM+P RG+ L RLR Y G P R V
Sbjct: 79 RTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVPDELKGREFV 123
>UniRef50_UPI0000EBD60B Cluster: PREDICTED: similar to ribosomal
protein L13a; n=2; Bos taurus|Rep: PREDICTED: similar to
ribosomal protein L13a - Bos taurus
Length = 112
Score = 37.1 bits (82), Expect = 0.083
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 36 MSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTY 188
+ + + NP+ GPF F P I TV+ ++P+K + + L L+ +
Sbjct: 6 LDLFHRPLDTNPSNGPFQFWVPKHIFRHTVQDLLPYKIKHDQETLEHLKVF 56
>UniRef50_Q6LXM6 Cluster: 50S ribosomal protein L13P; n=6;
Methanococcales|Rep: 50S ribosomal protein L13P -
Methanococcus maripaludis
Length = 137
Score = 37.1 bits (82), Expect = 0.083
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +3
Query: 45 LRKRCNV-NPAR-GPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCP 200
LR R ++ NP + GP R P I+ + +RGM+P+K RG ++++ G P
Sbjct: 52 LRTRKSISNPKKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVP 105
>UniRef50_Q9AVH9 Cluster: Putative senescence-associated protein;
n=1; Pisum sativum|Rep: Putative senescence-associated
protein - Pisum sativum (Garden pea)
Length = 255
Score = 36.3 bits (80), Expect = 0.14
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXF 92
SG R K+K M FLR+R N P+ GP F
Sbjct: 30 SGGLGRQKMKYMRFLRRRMNTKPSHGPITF 59
>UniRef50_P39473 Cluster: 50S ribosomal protein L13P; n=4;
Thermoprotei|Rep: 50S ribosomal protein L13P -
Sulfolobus acidocaldarius
Length = 148
Score = 36.3 bits (80), Expect = 0.14
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 93 RAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRRRV 227
R P I+ +TVRGM+P K + GK R L+ Y G P + + +
Sbjct: 76 RNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIPKELEGKSMI 119
>UniRef50_Q7V521 Cluster: 50S ribosomal protein L13; n=32;
Bacteria|Rep: 50S ribosomal protein L13 -
Prochlorococcus marinus (strain MIT 9313)
Length = 150
Score = 34.7 bits (76), Expect = 0.44
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 93 RAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRR 221
R P +I+ K ++GM+PH G+ R+L+ Y G P +R
Sbjct: 96 RLPERIVEKAIKGMLPHNA-LGRQLFRKLKVYRGPEHPHSAQR 137
>UniRef50_Q53K43 Cluster: Retrotransposon protein, putative,
unclassified; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Retrotransposon protein, putative,
unclassified - Oryza sativa subsp. japonica (Rice)
Length = 512
Score = 34.3 bits (75), Expect = 0.58
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 153 RGKNXLRRLRTYXGCPPPFDNRRRVV 230
RG+ L RL+ Y G PPP+D +R+V
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMV 34
Score = 32.3 bits (70), Expect = 2.4
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHE 306
+P AL+V L+PG YC +G+LS E
Sbjct: 35 IPDALKVLRLQPGHKYCLLGQLSKE 59
>UniRef50_Q3AW67 Cluster: 50S ribosomal protein L13; n=12;
Bacteria|Rep: 50S ribosomal protein L13 - Synechococcus
sp. (strain CC9902)
Length = 150
Score = 33.9 bits (74), Expect = 0.77
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 93 RAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPP 206
R P +I+ K ++GM+PH G+ R+L+ Y G P
Sbjct: 96 RIPERIVEKAIKGMLPHNA-LGRQMYRKLKVYKGTEHP 132
>UniRef50_Q6L294 Cluster: 50S ribosomal protein L13P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L13P -
Picrophilus torridus
Length = 138
Score = 33.9 bits (74), Expect = 0.77
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 75 RGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNR--RRVVSA 236
+GP+ + +IL +++ M+P K G L+R Y P +N+ R+ SA
Sbjct: 60 KGPYYPKTADRILKRSIGDMLPKKKTHGMEALKRCMVYANVPKSLENKNFERIESA 115
>UniRef50_A2AX70 Cluster: Gustatory receptor candidate 8; n=1;
Tribolium castaneum|Rep: Gustatory receptor candidate 8
- Tribolium castaneum (Red flour beetle)
Length = 379
Score = 33.5 bits (73), Expect = 1.0
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 9 NFFRNKLKLMSFLRKRCNVNPARGPFXFRAP--SKILWKTVRGMI 137
N+ + ++ +SF K CN+ P+ F P K LWK ++G++
Sbjct: 5 NYSKKDIRSLSFFYKICNIFGIVPPYSFEKPDSQKSLWKKIQGVV 49
>UniRef50_Q0PLZ7 Cluster: Putative regulatory protein; n=1;
Kitasatospora putterlickiae|Rep: Putative regulatory
protein - Kitasatospora putterlickiae
Length = 952
Score = 33.1 bits (72), Expect = 1.3
Identities = 21/66 (31%), Positives = 31/66 (46%)
Frame = -2
Query: 268 QVSDRRHVEQQALTTRRRLSKGGGHPSYVRSLLRXFLPRSVLCGIIPLTVFHRILDGALK 89
+ S R+ + + LT R+ +G G+ R LLR L + LCG+ PL + L
Sbjct: 813 EASGDRYEQVRVLTDLSRVHQGAGNKRRARLLLRQALHVAHLCGLKPLAQELLSVSADLG 872
Query: 88 XKGPRA 71
GP A
Sbjct: 873 ESGPAA 878
>UniRef50_Q3LWM1 Cluster: Ribosomal protein L13A; n=1; Bigelowiella
natans|Rep: Ribosomal protein L13A - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 181
Score = 32.3 bits (70), Expect = 2.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMI 137
SG + +++ + NP +GP+ F PS +L K V+GM+
Sbjct: 42 SGRYEHVYNRILKKKNLKTRTNPNKGPYFFSNPSSLLKKIVKGML 86
>UniRef50_Q1AU63 Cluster: 50S ribosomal protein L13; n=3;
Bacteria|Rep: 50S ribosomal protein L13 - Rubrobacter
xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 143
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 93 RAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPP 206
+ P +IL + VRGM+P KT + L++LR Y G P
Sbjct: 95 KRPEEILRQAVRGMMP-KTRLARRQLKKLRIYAGPEHP 131
>UniRef50_Q2VF30 Cluster: Polyprotein; n=1; Atlantic salmon swim
bladder sarcoma virus|Rep: Polyprotein - Atlantic salmon
swim bladder sarcoma virus
Length = 2146
Score = 31.5 bits (68), Expect = 4.1
Identities = 17/61 (27%), Positives = 24/61 (39%)
Frame = +3
Query: 63 VNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRRRVVSACC 242
+NP GP + +K W+TV G PH + + G P P + R C
Sbjct: 496 MNPGEGPAEYLDRAKTTWRTVHGE-PHDASETSLNMWKEVVINGTPAPVKAKLRQTVGLC 554
Query: 243 S 245
S
Sbjct: 555 S 555
>UniRef50_Q621K4 Cluster: Putative uncharacterized protein CBG02454;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG02454 - Caenorhabditis
briggsae
Length = 649
Score = 31.1 bits (67), Expect = 5.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 302 WDSLPT*Q*LRPGFRQKTRRAAGTYNTSTVIKGRRAPXI 186
WD LP+ + +RPG+ T+R T T ++GR P +
Sbjct: 76 WDELPSHR-VRPGYTTTTKRPKTTTTTVPWVRGRHRPQL 113
>UniRef50_Q5CT98 Cluster: Putative ABC transporter with 2x AAA and
11+ transmembrane domains; n=2; Cryptosporidium|Rep:
Putative ABC transporter with 2x AAA and 11+
transmembrane domains - Cryptosporidium parvum Iowa II
Length = 1928
Score = 31.1 bits (67), Expect = 5.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -2
Query: 253 RHVEQQALTTRRRLSKGGGHPSYVRSLLRXFLPRSVLCGIIPLTV 119
RH+EQ R G PS +R+LLR + P ++C I LT+
Sbjct: 71 RHLEQALRREERDAILGEREPSLMRALLRAYYPFILIC-IFSLTI 114
>UniRef50_O18718 Cluster: Ribosomal protein L13A; n=4;
Entamoeba|Rep: Ribosomal protein L13A - Entamoeba dispar
Length = 87
Score = 31.1 bits (67), Expect = 5.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 42 FLRKRCNVNPARGPFXFRAPSKILWK 119
+ RKR N NP RG F R+P++++ K
Sbjct: 62 YQRKRVNTNPTRGAFHHRSPAEMVRK 87
>UniRef50_Q67JX6 Cluster: 50S ribosomal protein L13; n=59;
Bacteria|Rep: 50S ribosomal protein L13 -
Symbiobacterium thermophilum
Length = 143
Score = 31.1 bits (67), Expect = 5.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 93 RAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPP 206
R P ++L ++GM+PH G+ R+L+ Y G P
Sbjct: 96 RRPERVLELAIKGMLPH-NRLGRQMYRKLKVYAGPEHP 132
>UniRef50_Q9X8T0 Cluster: Putative transmembrane protein; n=2;
Streptomyces|Rep: Putative transmembrane protein -
Streptomyces coelicolor
Length = 811
Score = 30.7 bits (66), Expect = 7.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 283 DSNYGQVSDRRHVEQQALTTRRRLSKGGGHPSY 185
D GQ D+RH R +GGGHPSY
Sbjct: 129 DDLVGQAGDQRHEPDAFAHLFRDQQQGGGHPSY 161
>UniRef50_Q1GNA9 Cluster: Senescence marker protein-30; n=1;
Sphingopyxis alaskensis|Rep: Senescence marker
protein-30 - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 289
Score = 30.3 bits (65), Expect = 9.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +3
Query: 81 PFXFRAPSKILWKTVRGMIPHKTE--RGKNXLRRLRTYXGCPPPFDNRRRVVSACCSTCL 254
PF A +++ W + G H+T+ G + + L GC P N +V+A + C
Sbjct: 16 PFWHAAEARLYWVDIEGCKIHRTDPATGTDAVMELAEQVGCIAPRAN-GGLVAALENGCA 74
Query: 255 LSETW 269
L + W
Sbjct: 75 LIDDW 79
>UniRef50_Q9TLV3 Cluster: Putative uncharacterized protein rpl13;
n=1; Cyanidium caldarium|Rep: Putative uncharacterized
protein rpl13 - Cyanidium caldarium
Length = 143
Score = 30.3 bits (65), Expect = 9.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +3
Query: 93 RAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPP 206
R P++IL + V+GM+P K+ GK L+ Y G P
Sbjct: 96 RIPNRILEQAVKGMLP-KSVLGKKMFSHLKVYAGDSHP 132
>UniRef50_Q9M3S6 Cluster: 60S L13 ribosomal protein; n=1;
Arabidopsis thaliana|Rep: 60S L13 ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 61
Score = 30.3 bits (65), Expect = 9.5
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +1
Query: 298 SHEIGWKYRDVVRKLED 348
+HE+GW+Y+ +V KLE+
Sbjct: 1 AHEVGWQYQGIVEKLEE 17
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,124,706
Number of Sequences: 1657284
Number of extensions: 6467532
Number of successful extensions: 13312
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 13103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13310
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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