Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3f19
(350 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 106 1e-24
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 106 1e-24
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 105 3e-24
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 2.6
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 25 4.5
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 24 6.0
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 24 7.9
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 24 7.9
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 106 bits (254), Expect = 1e-24
Identities = 46/76 (60%), Positives = 57/76 (75%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG+FFRNKLK +++LRK C NP+RG F FRAPS+I K VRGM+PHKT RG+ L L+
Sbjct: 45 SGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQ 104
Query: 183 TYXGCPPPFDNRRRVV 230
G PPPFD ++RVV
Sbjct: 105 AVEGIPPPFDKQKRVV 120
Score = 66.9 bits (156), Expect = 9e-13
Identities = 29/39 (74%), Positives = 32/39 (82%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAALRV LKPGR YC VGRLS E+GWKY D+V KLE+
Sbjct: 121 VPAALRVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEE 159
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 106 bits (254), Expect = 1e-24
Identities = 46/76 (60%), Positives = 57/76 (75%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG+FFRNKLK +++LRK C NP+RG F FRAPS+I K VRGM+PHKT RG+ L L+
Sbjct: 45 SGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQ 104
Query: 183 TYXGCPPPFDNRRRVV 230
G PPPFD ++RVV
Sbjct: 105 AVEGIPPPFDKQKRVV 120
Score = 67.3 bits (157), Expect = 6e-13
Identities = 29/39 (74%), Positives = 32/39 (82%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAALRV LKPGR YC VGRLS E+GWKY D+V KLE+
Sbjct: 121 VPAALRVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEE 159
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 105 bits (251), Expect = 3e-24
Identities = 45/76 (59%), Positives = 57/76 (75%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG+FFRNKLK +++LRK C NP+RG F FRAPS+I K VRGM+PHKT RG L+ L+
Sbjct: 45 SGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQ 104
Query: 183 TYXGCPPPFDNRRRVV 230
G PPPFD ++R+V
Sbjct: 105 ALEGIPPPFDKQKRLV 120
Score = 63.3 bits (147), Expect = 1e-11
Identities = 26/39 (66%), Positives = 32/39 (82%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAALRV LKP R YC +GRLS E+GWKY+++V KLE+
Sbjct: 121 VPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEE 159
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -2
Query: 229 TTRRRLSKGGGHPSYVRSLLRXFLPRSVLCGIIPL 125
T R+ SK G HP + S + C I+PL
Sbjct: 474 TRRQNASKNGIHPEVIASHTAQSFKSTHYCNILPL 508
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 24.6 bits (51), Expect = 4.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 79 PRAGFTLHLLRRNDISLSLFLKKLP 5
P G H+LR + LS +LKK P
Sbjct: 219 PNLGIFTHILRNSRNDLSNYLKKRP 243
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 24.2 bits (50), Expect = 6.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 178 SLLRXFLPRSVLCGIIPLTVFHRILDGAL 92
S L FLP+ LC +IPL + L G L
Sbjct: 693 SSLFAFLPQLSLCMLIPLVFGKKNLPGTL 721
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 350 LSSSLRTTSRYFHPISWDSL 291
LSSS+ T+R +HP+ D L
Sbjct: 324 LSSSMDKTARLWHPVRKDCL 343
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 199 GHPSYVRSLLRXFLPRSVLCGIIP 128
G+ SY+ + L+ FLP++V + P
Sbjct: 381 GNESYLSNFLKAFLPKTVCDYLFP 404
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,374
Number of Sequences: 5004
Number of extensions: 26838
Number of successful extensions: 60
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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