Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3f19
(350 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 105 1e-23
07_01_0071 - 522920-523063,524125-524212,524289-524677 100 3e-22
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 79 1e-15
11_04_0056 + 12942802-12942920,12943022-12943115 43 6e-05
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 31 0.34
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 29 1.4
04_03_0282 - 13874547-13874738,13875047-13875134,13875222-138753... 27 3.1
04_03_0779 - 19507771-19507992,19508678-19508990,19509235-195092... 27 4.1
11_06_0693 - 26334574-26336121 26 7.2
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 105 bits (252), Expect = 1e-23
Identities = 44/76 (57%), Positives = 56/76 (73%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG R K+K + FLRKR N P+ GP FR+P+KILW+TVRGMIPHKT+RG+ L RL+
Sbjct: 49 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLK 108
Query: 183 TYXGCPPPFDNRRRVV 230
Y G PPP+D +R+V
Sbjct: 109 AYEGVPPPYDRTKRMV 124
Score = 52.8 bits (121), Expect = 7e-08
Identities = 20/39 (51%), Positives = 29/39 (74%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
+P AL+V L+PG YC +G+LS E+GW Y D +R+LE+
Sbjct: 125 IPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIRELEE 163
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 100 bits (240), Expect = 3e-22
Identities = 42/76 (55%), Positives = 53/76 (69%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SG R K+K + FLRKR N P+ GP FRAPS+I W+TVRGMIPHKT RG+ L L+
Sbjct: 49 SGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLK 108
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D +R+V
Sbjct: 109 AFDGVPPPYDRTKRMV 124
Score = 54.0 bits (124), Expect = 3e-08
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VP AL+V L+PG YC +G+LS E+GW Y D +R+LE+
Sbjct: 125 VPDALKVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEE 163
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 78.6 bits (185), Expect = 1e-15
Identities = 32/57 (56%), Positives = 42/57 (73%)
Frame = +3
Query: 60 NVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRRRVV 230
N P+ GP FR+P+KILW+TVRGMIPHKT+RG+ L RL+ Y PP+D +R+V
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMV 58
Score = 48.0 bits (109), Expect = 2e-06
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVR 336
+P AL+V L+PG YC +G+LS E+GW Y D +R
Sbjct: 59 IPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 43.2 bits (97), Expect = 6e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKY 321
+P AL+V L+PG YC +G+LS E+GW Y
Sbjct: 35 IPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64
Score = 34.3 bits (75), Expect = 0.027
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 153 RGKNXLRRLRTYXGCPPPFDNRRRVV 230
RG+ L RL+ Y G PPP+D +R+V
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMV 34
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 30.7 bits (66), Expect = 0.34
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 93 RAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRRRV 227
R P +I+ VRGM+P K G+ L+ Y G P + ++ V
Sbjct: 619 RIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHEAQKPV 662
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 60 NVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPP 206
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>04_03_0282 -
13874547-13874738,13875047-13875134,13875222-13875328,
13875487-13875542,13875853-13875882,13877397-13877505,
13877774-13878318,13879584-13879668,13879753-13879914,
13880293-13880434,13880524-13880624,13882307-13882489
Length = 599
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -2
Query: 316 SIQFHGTVCLHDSNYGQVSDRRHVEQQALTTRRRL 212
S Q H T+ HDS GQ RRH+ T +L
Sbjct: 149 SPQEHHTLQKHDSTEGQNVARRHISSTVTVTPEKL 183
>04_03_0779 -
19507771-19507992,19508678-19508990,19509235-19509296,
19509845-19509904,19510260-19510367,19510452-19510561,
19510656-19510701,19510812-19510884,19510970-19511100,
19511270-19511356,19511871-19511968,19512849-19512971,
19513091-19513286
Length = 542
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 349 CLQAYEQHHGISIQFHGTVCLHDSNYGQVSDRRHV 245
C+Q ++ HG + G + HD +YG ++ R+V
Sbjct: 486 CVQHGKKEHGYEPKRDGNIDYHDLSYGTPAEVRNV 520
>11_06_0693 - 26334574-26336121
Length = 515
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 291 AYMTVITARFQTEDT*SSRHL-QHVDGYQR 205
AY T+ITA F+ +D ++RHL + Y+R
Sbjct: 191 AYNTLITACFRADDLGAARHLFDEMQRYRR 220
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,899,954
Number of Sequences: 37544
Number of extensions: 195794
Number of successful extensions: 420
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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