Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f19
         (350 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   6e-04
SB_22075| Best HMM Match : Dickkopf_N (HMM E-Value=0.068)              28   2.4  
SB_21574| Best HMM Match : T-box (HMM E-Value=0)                       27   3.2  
SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1)                      27   4.3  
SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)             27   4.3  
SB_14360| Best HMM Match : TFIIS_C (HMM E-Value=0.032)                 27   4.3  
SB_34763| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_30356| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  

>SB_23833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 39.9 bits (89), Expect = 6e-04
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +3

Query: 132 MIPHKTERGKNXLRRLRTYXGCPPPFD 212
           MIPHKT++G   + R++ + G PPP+D
Sbjct: 1   MIPHKTKKGTEAMNRMKVFDGVPPPYD 27


>SB_22075| Best HMM Match : Dickkopf_N (HMM E-Value=0.068)
          Length = 144

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = +3

Query: 9   NFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTY 188
           ++FR K   M  L + C+ +PA  P    A   +     R  +PH   +  N       +
Sbjct: 62  SWFRKKCHRMRHLHQLCSTSPANSPVFLIARKLLPRMRGRSRVPHILCQLANTSTPKMRH 121

Query: 189 XGCPPPFDNRRRV 227
              P P +NR R+
Sbjct: 122 QADPGP-NNRARI 133


>SB_21574| Best HMM Match : T-box (HMM E-Value=0)
          Length = 473

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 263 FRQKTRRAAGTYNTSTVIKGRRAPXICT*PP 171
           FRQ  R+     N  +  +GR+AP +C+ PP
Sbjct: 187 FRQGKRQLNPADNHQSPPRGRKAPRLCSPPP 217


>SB_55209| Best HMM Match : WRKY (HMM E-Value=1.1)
          Length = 386

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -2

Query: 76  RAGFTLHLLRRNDISLSLFLKKL 8
           R G  LHL  R DI L LFL +L
Sbjct: 231 RIGIELHLFVRRDIELHLFLLQL 253


>SB_20037| Best HMM Match : 7tm_1 (HMM E-Value=3.09687e-43)
          Length = 453

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 6   GNFFRNKLKLMSFLRKRCNVNPARGP 83
           GN F   L+L S  R+ C+ NP+  P
Sbjct: 318 GNVFSRPLRLFSRARRMCSWNPSDNP 343


>SB_14360| Best HMM Match : TFIIS_C (HMM E-Value=0.032)
          Length = 299

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 135 IPHKTERGKNXLRRLRTYXGCPPP 206
           IPHK ER  N  +    Y  C PP
Sbjct: 64  IPHKGERSANTAQDTNRYLYCDPP 87


>SB_34763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 183 TYXGCPPPFDNRRRVVSACCSTCLLSE 263
           T+ G PPP  ++   +  C ++CL  +
Sbjct: 58  TFMGAPPPDISKHGALGTCITSCLYEQ 84


>SB_30356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
 Frame = -2

Query: 316 SIQFHGTVCLHDSNYGQVSDRRHVEQQALTTRRRLSKGGGHPSYVRSLLRXFLPRSVLCG 137
           S+ F   + + +  Y  +  ++H++ Q LTT  +L+      SY ++     L R   C 
Sbjct: 353 SVAFFAFLRVGEITYSGLEGKKHLQIQHLTTAFKLTFVKFKHSYNKTPFSLILKRQTTC- 411

Query: 136 IIPLTVFHRILDGALKXKGPRAGF-TLHLLRRNDISLSLFLKK 11
             P+    + L+  ++ K P A F T ++     I LS F ++
Sbjct: 412 -CPVEALAQYLN--IRDKRPGALFLTSNVCLSLGILLSTFSRR 451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,309,318
Number of Sequences: 59808
Number of extensions: 217868
Number of successful extensions: 1110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)