Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3f19
(350 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X56932-1|CAA40254.1| 203|Homo sapiens 23 kD highly basic protei... 119 2e-27
BC071929-1|AAH71929.1| 203|Homo sapiens ribosomal protein L13a ... 119 2e-27
BC070223-1|AAH70223.1| 203|Homo sapiens ribosomal protein L13a ... 119 2e-27
BC065236-1|AAH65236.1| 203|Homo sapiens ribosomal protein L13a ... 119 2e-27
BC062537-1|AAH62537.1| 203|Homo sapiens ribosomal protein L13a ... 119 2e-27
BC004900-1|AAH04900.2| 201|Homo sapiens RPL13A protein protein. 119 2e-27
BC001836-1|AAH01836.1| 203|Homo sapiens ribosomal protein L13a ... 119 2e-27
BC001675-1|AAH01675.1| 203|Homo sapiens ribosomal protein L13a ... 119 2e-27
BC000514-1|AAH00514.1| 203|Homo sapiens ribosomal protein L13a ... 119 2e-27
AB028893-1|BAA88214.1| 203|Homo sapiens ribosomal protein L13a ... 119 2e-27
AK222747-1|BAD96467.1| 203|Homo sapiens ribosomal protein L13a ... 117 9e-27
AL356120-1|CAH73036.1| 203|Homo sapiens protein ( Human DNA seq... 113 2e-25
BC105605-1|AAI05606.1| 142|Homo sapiens RPL13A protein protein. 89 4e-18
AB082924-1|BAC16800.1| 142|Homo sapiens ribosomal protein L13a ... 89 4e-18
BC067891-1|AAH67891.1| 102|Homo sapiens Unknown (protein for MG... 43 3e-04
AK090476-1|BAC03457.1| 660|Homo sapiens FLJ00398 protein protein. 31 1.4
BC067865-1|AAH67865.1| 231|Homo sapiens IAH1 protein protein. 29 4.1
>X56932-1|CAA40254.1| 203|Homo sapiens 23 kD highly basic protein
protein.
Length = 203
Score = 119 bits (287), Expect = 2e-27
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKLK ++FLRKR N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+
Sbjct: 44 SGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLK 103
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D ++R+V
Sbjct: 104 VFDGIPPPYDKKKRMV 119
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 158
>BC071929-1|AAH71929.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 119 bits (287), Expect = 2e-27
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKLK ++FLRKR N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+
Sbjct: 44 SGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLK 103
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D ++R+V
Sbjct: 104 VFDGIPPPYDKKKRMV 119
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 158
>BC070223-1|AAH70223.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 119 bits (287), Expect = 2e-27
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKLK ++FLRKR N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+
Sbjct: 44 SGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLK 103
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D ++R+V
Sbjct: 104 VFDGIPPPYDKKKRMV 119
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 158
>BC065236-1|AAH65236.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 119 bits (287), Expect = 2e-27
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKLK ++FLRKR N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+
Sbjct: 44 SGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLK 103
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D ++R+V
Sbjct: 104 VFDGIPPPYDKKKRMV 119
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 158
>BC062537-1|AAH62537.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 119 bits (287), Expect = 2e-27
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKLK ++FLRKR N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+
Sbjct: 44 SGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLK 103
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D ++R+V
Sbjct: 104 VFDGIPPPYDKKKRMV 119
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 158
>BC004900-1|AAH04900.2| 201|Homo sapiens RPL13A protein protein.
Length = 201
Score = 119 bits (287), Expect = 2e-27
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKLK ++FLRKR N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+
Sbjct: 42 SGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLK 101
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D ++R+V
Sbjct: 102 VFDGIPPPYDKKKRMV 117
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 118 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 156
>BC001836-1|AAH01836.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 119 bits (287), Expect = 2e-27
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKLK ++FLRKR N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+
Sbjct: 44 SGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLK 103
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D ++R+V
Sbjct: 104 VFDGIPPPYDKKKRMV 119
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 158
>BC001675-1|AAH01675.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 119 bits (287), Expect = 2e-27
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKLK ++FLRKR N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+
Sbjct: 44 SGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLK 103
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D ++R+V
Sbjct: 104 VFDGIPPPYDKKKRMV 119
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 158
>BC000514-1|AAH00514.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 119 bits (287), Expect = 2e-27
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKLK ++FLRKR N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+
Sbjct: 44 SGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLK 103
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D ++R+V
Sbjct: 104 VFDGIPPPYDKKKRMV 119
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 158
>AB028893-1|BAA88214.1| 203|Homo sapiens ribosomal protein L13a
protein.
Length = 203
Score = 119 bits (287), Expect = 2e-27
Identities = 48/76 (63%), Positives = 64/76 (84%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKLK ++FLRKR N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+
Sbjct: 44 SGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLK 103
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D ++R+V
Sbjct: 104 VFDGIPPPYDKKKRMV 119
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 158
>AK222747-1|BAD96467.1| 203|Homo sapiens ribosomal protein L13a
variant protein.
Length = 203
Score = 117 bits (282), Expect = 9e-27
Identities = 47/76 (61%), Positives = 63/76 (82%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKLK ++FLRKR N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L L+
Sbjct: 44 SGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDHLK 103
Query: 183 TYXGCPPPFDNRRRVV 230
+ G PPP+D ++R+V
Sbjct: 104 VFDGIPPPYDKKKRMV 119
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 158
>AL356120-1|CAH73036.1| 203|Homo sapiens protein ( Human DNA
sequence from clone RP11-365K22 on chromosome 13
Contains a novel gene similar to ribosomal protein L13a
(RPL13A). ).
Length = 203
Score = 113 bits (271), Expect = 2e-25
Identities = 45/76 (59%), Positives = 62/76 (81%)
Frame = +3
Query: 3 SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
SGNF+RNKL ++FLRKR N +P+RGP+ FRAPS++ W+TVRGM+PHKT+RG+ L RL+
Sbjct: 44 SGNFYRNKLNYLAFLRKRMNTSPSRGPYHFRAPSRVFWRTVRGMLPHKTKRGQAALDRLK 103
Query: 183 TYXGCPPPFDNRRRVV 230
G PPP+D ++R+V
Sbjct: 104 VSDGIPPPYDKKKRMV 119
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 120 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 158
>BC105605-1|AAI05606.1| 142|Homo sapiens RPL13A protein protein.
Length = 142
Score = 89.0 bits (211), Expect = 4e-18
Identities = 34/57 (59%), Positives = 47/57 (82%)
Frame = +3
Query: 60 NVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRRRVV 230
N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+ + G PPP+D ++R+V
Sbjct: 2 NTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMV 58
Score = 55.2 bits (127), Expect = 5e-08
Identities = 23/39 (58%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LED
Sbjct: 59 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLED 97
>AB082924-1|BAC16800.1| 142|Homo sapiens ribosomal protein L13a
protein.
Length = 142
Score = 89.0 bits (211), Expect = 4e-18
Identities = 34/57 (59%), Positives = 47/57 (82%)
Frame = +3
Query: 60 NVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLRTYXGCPPPFDNRRRVV 230
N NP+RGP+ FRAPS+I W+TVRGM+PHKT+RG+ L RL+ + G PPP+D ++R+V
Sbjct: 2 NTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMV 58
Score = 53.6 bits (123), Expect = 2e-07
Identities = 22/39 (56%), Positives = 30/39 (76%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + ++GRL+HE+GWKY+ V LE+
Sbjct: 59 VPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEE 97
>BC067891-1|AAH67891.1| 102|Homo sapiens Unknown (protein for
MGC:87657) protein.
Length = 102
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +1
Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLED 348
VPAAL+V LKP R + +GR + E+ WKY+ V LE+
Sbjct: 34 VPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEE 72
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 132 MIPHKTERGKNXLRRLRTYXGCPPPFDNRRR-VVSACCSTCLLSETWP*LLSCRQTVP*N 308
M+ HKT+RG L L+ + G PPP+D ++R VV A L T L RQ
Sbjct: 1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVR 60
Query: 309 W 311
W
Sbjct: 61 W 61
>AK090476-1|BAC03457.1| 660|Homo sapiens FLJ00398 protein protein.
Length = 660
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -2
Query: 283 DSNYGQVSDRRHVEQ--QALTTRRRLSKGGGHPSYVRSLLRXFLPRS 149
D+ G S+ +++ +AL ++ ++GGGHP+ +L R FLP S
Sbjct: 68 DAPLGPCSNDSRIQRHRKALLSKVEATRGGGHPARTVALDRLFLPLS 114
>BC067865-1|AAH67865.1| 231|Homo sapiens IAH1 protein protein.
Length = 231
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Frame = -2
Query: 274 YGQVSDRRHVEQQALTTRRRLSKGGGHPSYVRSLLRXFLPRSVLCGI-----IPLTVFHR 110
+G V R E AL + L +G HP Y + LPR + G + +T+F
Sbjct: 12 HGAVRGRGLRECPALASLVAL-RGLHHPGYNTRWAKIILPRLIRKGNSLDIPVAVTIFFG 70
Query: 109 ILDGALKXKGPRAGFTLHLLRRNDISLSLFLKKL 8
D ALK + P+ L N S+ +LK +
Sbjct: 71 ANDSALKDENPKQHIPLEEYAANLKSMVQYLKSV 104
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,001,672
Number of Sequences: 237096
Number of extensions: 1079935
Number of successful extensions: 8994
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8994
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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