Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f19
         (350 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051640-1|AAK93064.1|  205|Drosophila melanogaster GM13948p pro...   122   1e-28
AE014297-307|AAF51987.1|  205|Drosophila melanogaster CG1475-PB ...   122   1e-28
AY118321-1|AAM48350.1|  111|Drosophila melanogaster LD08201p pro...    27   6.7  
AY094776-1|AAM11129.1|  243|Drosophila melanogaster LD04380p pro...    27   6.7  
AE014298-3113|AAF50833.1|  243|Drosophila melanogaster CG1696-PA...    27   6.7  

>AY051640-1|AAK93064.1|  205|Drosophila melanogaster GM13948p
           protein.
          Length = 205

 Score =  122 bits (294), Expect = 1e-28
 Identities = 52/76 (68%), Positives = 64/76 (84%)
 Frame = +3

Query: 3   SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
           SG+F+RNK+K +++LRKRCNVNPARGPF FRAPS+I +K VRGMIPHKT+RG+  L RLR
Sbjct: 46  SGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLR 105

Query: 183 TYXGCPPPFDNRRRVV 230
            + G P P+D RRRVV
Sbjct: 106 VFDGIPSPYDKRRRVV 121



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +1

Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 345
           VP A+RV  L+  R YC VGRLSHE+GW Y+DV++ LE
Sbjct: 122 VPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLE 159


>AE014297-307|AAF51987.1|  205|Drosophila melanogaster CG1475-PB
           protein.
          Length = 205

 Score =  122 bits (294), Expect = 1e-28
 Identities = 52/76 (68%), Positives = 64/76 (84%)
 Frame = +3

Query: 3   SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
           SG+F+RNK+K +++LRKRCNVNPARGPF FRAPS+I +K VRGMIPHKT+RG+  L RLR
Sbjct: 46  SGHFYRNKIKFLAYLRKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLR 105

Query: 183 TYXGCPPPFDNRRRVV 230
            + G P P+D RRRVV
Sbjct: 106 VFDGIPSPYDKRRRVV 121



 Score = 58.8 bits (136), Expect = 2e-09
 Identities = 23/38 (60%), Positives = 29/38 (76%)
 Frame = +1

Query: 232 VPAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 345
           VP A+RV  L+  R YC VGRLSHE+GW Y+DV++ LE
Sbjct: 122 VPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLE 159


>AY118321-1|AAM48350.1|  111|Drosophila melanogaster LD08201p
           protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 135 IPHKTERGKNXLRRLRTYXGCPPPFDNRRRVVSACCS 245
           +  K + G+N LRR      C P + +  + +SA CS
Sbjct: 8   VADKLDNGRNILRRRYYRQHCTPDYGSYTKDLSAICS 44


>AY094776-1|AAM11129.1|  243|Drosophila melanogaster LD04380p
           protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 135 IPHKTERGKNXLRRLRTYXGCPPPFDNRRRVVSACCS 245
           +  K + G+N LRR      C P + +  + +SA CS
Sbjct: 140 VADKLDNGRNILRRRYYRQHCTPDYGSYTKDLSAICS 176


>AE014298-3113|AAF50833.1|  243|Drosophila melanogaster CG1696-PA
           protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 135 IPHKTERGKNXLRRLRTYXGCPPPFDNRRRVVSACCS 245
           +  K + G+N LRR      C P + +  + +SA CS
Sbjct: 140 VADKLDNGRNILRRRYYRQHCTPDYGSYTKDLSAICS 176


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,126,497
Number of Sequences: 53049
Number of extensions: 315620
Number of successful extensions: 558
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 838265760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)