Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f19
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   109   5e-25
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   109   5e-25
U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical p...    27   2.9  
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    26   6.6  
L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase prote...    26   8.7  
L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase prote...    26   8.7  
L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase prote...    26   8.7  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  109 bits (262), Expect = 5e-25
 Identities = 46/73 (63%), Positives = 54/73 (73%)
 Frame = +3

Query: 3   SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
           SGNF R+KLK MSFLRKRCN+NPARG F +RAP KI W+TVRGM+PHKT RG   L+ LR
Sbjct: 45  SGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLR 104

Query: 183 TYXGCPPPFDNRR 221
            Y G P  +   +
Sbjct: 105 AYEGVPAKYQKTK 117



 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +1

Query: 235 PAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 345
           P+A R F L+P R +C VGRLSHE+GW+++DVV KLE
Sbjct: 122 PSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLE 157


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  109 bits (262), Expect = 5e-25
 Identities = 46/73 (63%), Positives = 54/73 (73%)
 Frame = +3

Query: 3   SGNFFRNKLKLMSFLRKRCNVNPARGPFXFRAPSKILWKTVRGMIPHKTERGKNXLRRLR 182
           SGNF R+KLK MSFLRKRCN+NPARG F +RAP KI W+TVRGM+PHKT RG   L+ LR
Sbjct: 45  SGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLR 104

Query: 183 TYXGCPPPFDNRR 221
            Y G P  +   +
Sbjct: 105 AYEGVPAKYQKTK 117



 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 23/37 (62%), Positives = 30/37 (81%)
 Frame = +1

Query: 235 PAALRVFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLE 345
           P+A R F L+P R +C VGRLSHE+GW+++DVV KLE
Sbjct: 122 PSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLE 157


>U64848-10|AAB04888.1|  168|Caenorhabditis elegans Hypothetical
           protein C50E3.2 protein.
          Length = 168

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 339 LTNNITVFPSNFMGQSAYMTVITARFQTE 253
           L NNI VFPSN + +++ MT+   R +T+
Sbjct: 27  LENNILVFPSN-ISEASGMTLFHGRIETK 54


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
            lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 195  CPPPFDNRRRVVSACCSTCLLSET 266
            CPP F  R+  ++ C  TC   ET
Sbjct: 1664 CPPGFYGRQCEINECSETCWNGET 1687


>L25599-9|AAN63393.1|  683|Caenorhabditis elegans Aconitase protein
           2, isoform c protein.
          Length = 683

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -2

Query: 295 VCLHDSNYGQVSDRRHVEQQALTTRRRLSKGGGHPSYVRSLLRXFLPRSVLCGIIPLT 122
           V + D NYG+ S R H    AL  R      GG    V+S  R         G++PLT
Sbjct: 558 VAIGDENYGEGSSREHA---ALEPRHL----GGRAIIVKSFARIHETNLKKQGMLPLT 608


>L25599-8|AAL65788.1|  665|Caenorhabditis elegans Aconitase protein
           2, isoform b protein.
          Length = 665

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -2

Query: 295 VCLHDSNYGQVSDRRHVEQQALTTRRRLSKGGGHPSYVRSLLRXFLPRSVLCGIIPLT 122
           V + D NYG+ S R H    AL  R      GG    V+S  R         G++PLT
Sbjct: 540 VAIGDENYGEGSSREHA---ALEPRHL----GGRAIIVKSFARIHETNLKKQGMLPLT 590


>L25599-7|AAA28050.2|  777|Caenorhabditis elegans Aconitase protein
           2, isoform a protein.
          Length = 777

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = -2

Query: 295 VCLHDSNYGQVSDRRHVEQQALTTRRRLSKGGGHPSYVRSLLRXFLPRSVLCGIIPLT 122
           V + D NYG+ S R H    AL  R      GG    V+S  R         G++PLT
Sbjct: 652 VAIGDENYGEGSSREHA---ALEPRHL----GGRAIIVKSFARIHETNLKKQGMLPLT 702


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,147,297
Number of Sequences: 27780
Number of extensions: 153701
Number of successful extensions: 289
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)