Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f18
         (181 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    19   4.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    19   4.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          18   8.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    18   8.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    18   8.1  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory
          receptor candidate 61 protein.
          Length = 670

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = -1

Query: 58 KCXRVSTAANCRL 20
          KC R+ T  NC +
Sbjct: 32 KCQRLKTDKNCTI 44


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.0 bits (37), Expect = 4.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 125 MKQSKNCALDLQFLPAKS 178
           MK++K+C +++   P +S
Sbjct: 397 MKEAKHCGVNVPVPPMQS 414


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 60  F*FPRVQ*TLCVW 98
           F FPR + TL +W
Sbjct: 651 FFFPRWRQTLAMW 663


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +2

Query: 86  ALCLAICQRQS*IMKQSKNCALDLQFLPA 172
           A CL + ++Q  I  Q++      + LPA
Sbjct: 151 ATCLRLSEKQVKIWFQNRRVKYKKEDLPA 179


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 18.2 bits (35), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +3

Query: 90   CVWQFASGNR 119
            CV++FAS  R
Sbjct: 1140 CVYEFASDER 1149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,858
Number of Sequences: 336
Number of extensions: 523
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 39
effective length of database: 109,481
effective search space used:  2189620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)