Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f18
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    23   5.3  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    23   5.3  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    23   7.1  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    23   7.1  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    23   7.1  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    23   7.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    22   9.3  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       22   9.3  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    22   9.3  

>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 141 FLLCFIIHDCRWQIAKHKAFIAXVEIKTSVXEFQR 37
           FL+  I    +W   +HKAF+    I+++  E  R
Sbjct: 298 FLISSIYEIWKWCRIRHKAFLLDEHIRSNKFEDTR 332


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 44  NSXTLVLISTXA-INALCLAICQRQS*IMKQSKNC 145
           +S  L+L S     N  CL IC+R+  +++QS  C
Sbjct: 700 DSLFLLLASVVPKFNRHCLKICERRLPLLQQSFFC 734


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 82  KRFVFGNLPAAIVNNETKQKLRIGSPIFAG 171
           +R+V  +LP  +   E +++LR+  P   G
Sbjct: 539 QRYVIESLPEEMQTEELRKELRVQLPKIGG 568


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 159 WRSNAQFLLCFIIHDCRWQIAKHK 88
           W S+  FLL  +IH   W I ++K
Sbjct: 194 WISSGFFLLFSLIHLGLWTIERNK 217


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 79  NKRFVFGNLPAAIVNNETKQK 141
           N  F FGNL A    N TK++
Sbjct: 2   NLEFSFGNLIAKNTENSTKEE 22


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 79  NKRFVFGNLPAAIVNNET 132
           N+RF + N PA++ N+ T
Sbjct: 123 NQRFTYNNHPASVENSLT 140


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -2

Query: 132 CFIIHDCRWQI 100
           CF  HDCR QI
Sbjct: 101 CFRCHDCRKQI 111


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 94  FGNLPAAIVNNETKQKLRIGSPI 162
           + N+P +  NNE   K   G+PI
Sbjct: 114 YNNIPVSDTNNEEISKNIYGAPI 136


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 4   IXVLSEDGSLLPLKLXNTCFNFHXCNKRFVFGNLPAAIVNNETKQKLRI 150
           + V S D S +P      C +    +KR+VFG++          Q+LR+
Sbjct: 18  VSVSSRDTSCIP------CIHLFFDSKRYVFGSVGEGCQRAILSQQLRL 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,446
Number of Sequences: 5004
Number of extensions: 9071
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)