Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f18
         (181 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin c-t...    25   7.1  
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    25   9.4  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    25   9.4  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    25   9.4  
AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine re...    25   9.4  

>AF125955-1|AAD14718.1|  216|Caenorhabditis elegans Ubiquitin
           c-terminal hydrolase(family 1) protein 1 protein.
          Length = 216

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 175 FRRQKLEIQCAVFALFH 125
           F +QK+   C  FALFH
Sbjct: 77  FMKQKISNACGTFALFH 93


>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 179 SFSPAKIGDPMRSFCFVSLFTIA 111
           +  PAK  +    FCFV L T+A
Sbjct: 417 TIKPAKSANACARFCFVGLCTVA 439


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 179 SFSPAKIGDPMRSFCFVSLFTIA 111
           +  PAK  +    FCFV L T+A
Sbjct: 417 TIKPAKSANACARFCFVGLCTVA 439


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 179 SFSPAKIGDPMRSFCFVSLFTIA 111
           +  PAK  +    FCFV L T+A
Sbjct: 417 TIKPAKSANACARFCFVGLCTVA 439


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 179 SFSPAKIGDPMRSFCFVSLFTIA 111
           +  PAK  +    FCFV L T+A
Sbjct: 417 TIKPAKSANACARFCFVGLCTVA 439


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
           protein T06D8.1b protein.
          Length = 3653

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 179 SFSPAKIGDPMRSFCFVSLFTIA 111
           +  PAK  +    FCFV L T+A
Sbjct: 417 TIKPAKSANACARFCFVGLCTVA 439


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
           protein T06D8.1a protein.
          Length = 3719

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 179 SFSPAKIGDPMRSFCFVSLFTIA 111
           +  PAK  +    FCFV L T+A
Sbjct: 417 TIKPAKSANACARFCFVGLCTVA 439


>AF022980-4|AAG24191.1|  335|Caenorhabditis elegans Serpentine
           receptor, class j protein50 protein.
          Length = 335

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 140 FCFVSLFTIAAGKLPNTKRLLHXWKLKQVXSSFNGSKLPSSLKT 9
           F FV    I     P  KR+LH WK  +  ++     LP S  T
Sbjct: 290 FSFVDPLAIIFCLPPLRKRILHFWKNMKNSANIIAPTLPISNPT 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,886,171
Number of Sequences: 27780
Number of extensions: 56458
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)