Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f12
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       31   0.008
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.2  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   3.5  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    22   4.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   8.2  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   8.2  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 31.5 bits (68), Expect = 0.008
 Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 446 YGVEDPHTGNLQNHKEQRDGDVVRGEYSLVE-PDGSVRLVRYTAD 577
           Y VE  +    +  +   DG +V GEY +V   DGS+R VRYTAD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIV-GEYGVVSHDDGSLRGVRYTAD 238


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +2

Query: 440 YAYGVEDPHTGNLQNHKEQRDGDVVRGEY 526
           YA+   DPH  N+ ++ +  + D+++G Y
Sbjct: 209 YAFATIDPHNFNMISNDD--ESDIIQGGY 235


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -1

Query: 567 YLTSLTEPSGSTSEYSPRTTSPSRCSLWFWRF 472
           Y+TS ++      +++P   +PS C+   + F
Sbjct: 527 YITSWSQKRPGAGKFTPEDINPSLCTHIIYAF 558


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +3

Query: 471 ETSRTTRNSVTATSCVENIRWLSPTVPLDWLGIQQTRRTVSKL*YTKRPEVKLKR 635
           E +     S   T+C  N  +   +  +D+  IQ +   + K  YT++   K+ R
Sbjct: 28  EDANNLTQSTILTTCESNTDFSFGSKTIDFRKIQCSNSPLRKARYTEKGTCKMGR 82


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 473 FLCEDLLRHKRMCSPAWPRNLRSSNVHIW 387
           F  E+ +   R C  A   NL  S + +W
Sbjct: 90  FFKENYVSRPRRCELAAQLNLPESTIKVW 118


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 501 SRCSLWFWRFPV 466
           +RC LW  +FP+
Sbjct: 51  NRCDLWSEKFPI 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,180
Number of Sequences: 336
Number of extensions: 4114
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)