Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f12
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003     31   1.3  
07_03_0889 - 22316945-22317062,22317149-22318794                       29   3.1  
11_06_0356 - 22654329-22654571,22654695-22654898,22655065-226553...    29   4.1  
07_03_0015 - 12447947-12448393                                         29   4.1  
07_03_0137 + 14101849-14102511                                         29   5.4  
06_01_1061 + 8562039-8562485                                           29   5.4  
08_01_0012 - 89798-90514                                               28   7.1  
02_02_0074 + 6567362-6567550,6567685-6567753,6567869-6567970,656...    28   7.1  

>12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003
          Length = 603

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 586 VLRVCCIPNQSNGTVGLNQRIFSTHDVAVTLFLVVLEVSCVRIF 455
           + ++C IPN  + +VG N  + S HD +   F V +E   V+IF
Sbjct: 514 IQKMCYIPNSQHYSVGCNSVLQSQHDES---FAVKMESDSVKIF 554


>07_03_0889 - 22316945-22317062,22317149-22318794
          Length = 587

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +2

Query: 212 LATPAFTGKTGGYSYNRFSGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAK 391
           LA  A  G  GG  +   +G V G +VE    A+E +P  Q   YG     GK+   +  
Sbjct: 57  LADIATGGGEGGEGHGALAG-VLGAVVETAREASELVPRSQGRHYG----GGKLRLRSDL 111

Query: 392 YAHLKTVD-YVAKPDYTYAYG 451
                T+D  VA+ D  YA G
Sbjct: 112 DVVAGTLDALVARVDEVYASG 132


>11_06_0356 -
           22654329-22654571,22654695-22654898,22655065-22655319,
           22655435-22655626,22655738-22656046,22656149-22656355,
           22656450-22656527,22657493-22657747,22657850-22658000,
           22658269-22658500,22658631-22658886,22658960-22659091
          Length = 837

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -2

Query: 713 CTI*MFYKTSSRWSHLRLVSDVRNVRALELDLRPFCVLQLGNRSSGLLYT*PV*RN-RRA 537
           C+I  F+  +SR+ H   V    N   L +  R F    LGN +  L+   P   N  RA
Sbjct: 495 CSIVGFFARASRYMHAIGVYVNTNQLNLAVSRRRFRTDNLGNANEKLVKIGPWGGNGGRA 554

Query: 536 QPANILHARRRRHAVPCGS 480
              N+ H R    A+  GS
Sbjct: 555 HDVNVAHHRLESIAIGSGS 573


>07_03_0015 - 12447947-12448393
          Length = 148

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 528 EYSPRTTSPSRCSLWFWR 475
           E  PR T P RC  W+WR
Sbjct: 32  EARPRATLPPRCRRWWWR 49


>07_03_0137 + 14101849-14102511
          Length = 220

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 528 EYSPRTTSPSRCSLWFWR 475
           E  PR T P RC  W WR
Sbjct: 59  EARPRATLPLRCRTWLWR 76


>06_01_1061 + 8562039-8562485
          Length = 148

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 528 EYSPRTTSPSRCSLWFWR 475
           E  PR T P RC  W+WR
Sbjct: 32  EARPRATLPLRCRRWWWR 49


>08_01_0012 - 89798-90514
          Length = 238

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
 Frame = -3

Query: 532 QRIFSTHDVAVTLFLVVLEVSCVRIFYAISVCV--------VRLGHVIYGLQMCIFGGVR 377
           Q IF+TH V + L LVVL    +  + ++S+ V        V LG    GL +   GGV 
Sbjct: 51  QLIFNTHPVLMVLGLVVLAAEAILSYRSLSIIVSSRDARKKVHLGLHAVGLAL---GGVG 107

Query: 376 VY 371
           +Y
Sbjct: 108 IY 109


>02_02_0074 +
           6567362-6567550,6567685-6567753,6567869-6567970,
           6568386-6568627,6569057-6569195,6569298-6569333,
           6569838-6569972,6570315-6570547,6571204-6571298,
           6571331-6571374,6571808-6571888
          Length = 454

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 269 GPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPD 382
           G +S   +E  +   +GIP +    Y Y H S  + PD
Sbjct: 168 GCISATPIEKPIDIVDGIPLEMPLAYFYGHPSPSVSPD 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,872,782
Number of Sequences: 37544
Number of extensions: 465578
Number of successful extensions: 1322
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1322
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)