Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3f12
(765 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45619| Best HMM Match : M (HMM E-Value=0.01) 31 1.3
SB_33820| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 29 3.1
SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019) 29 5.4
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 28 9.5
>SB_45619| Best HMM Match : M (HMM E-Value=0.01)
Length = 1315
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 302 VPAAEGIPAQQHADYGYDH-NSGKIHPDTAKYAHLKTVDYVAKPDYTYA 445
+P QQ ADY +H N+ + P T + ++ DY D TYA
Sbjct: 917 MPQTTTTRTQQSADYATNHENTQRTMPQTTRTRTQQSADYAINHDNTYA 965
>SB_33820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 33 LPQLDKFTIARILSELTAGIKPQDPWNKHQSCLDL 137
L Q K A +L+E+ GI+ + PWN H++ LDL
Sbjct: 243 LQQAVKSERAEVLNEIADGIRDEAPWNIHRA-LDL 276
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 245 GYSYNRFSGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAKYAHLKTV 412
GY+ + GQ ++ P EG+P+Q++ GY + P ++Y T+
Sbjct: 624 GYAPQGYQPEYGGQSMQPPPPKTEGVPSQEYPP-GYGVEGQESQPPLSEYQQQPTI 678
>SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = +1
Query: 361 FRENTPGHRQICTFEDRR-LRGQAGLHI-RLW---RRRSSHRKPPEP 486
F +NT HR + R+ +R H + W R+S H+ PPEP
Sbjct: 218 FMKNTSNHRLVLALAKRQGIRDVTAKHFWKTWIPLTRKSPHKTPPEP 264
>SB_47814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 622 TSGLFVYYSLETVLRVCCIPNQSNGTVGLNQRIFS 518
TSG ++ L +V VC + Q NG VG N+ + S
Sbjct: 1242 TSG-YLQIDLNSVFVVCAVATQGNGLVGKNEWVTS 1275
>SB_43028| Best HMM Match : Cornifin (HMM E-Value=0.0019)
Length = 512
Score = 28.7 bits (61), Expect = 5.4
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +2
Query: 245 GYSYNRFSGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAKYAHLKTVDYVA 424
G Y F+G + ++ P GI + + +G IHPD H D +
Sbjct: 395 GIIYPDFTGIIYPDYTDIIYPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTD-II 453
Query: 425 KPDYT 439
PDYT
Sbjct: 454 HPDYT 458
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +2
Query: 245 GYSYNRFSGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAKYAHLKTVDYVA 424
G Y F+G + ++ P GI + + +G IHPD H D +
Sbjct: 259 GIIYPDFTGIIYPDYTDIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTGIIHPDYTD-II 317
Query: 425 KPDYT 439
PDYT
Sbjct: 318 HPDYT 322
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = -3
Query: 622 TSGLFVYYSLETVLRVCCIPNQSNGTVGLNQRIFSTHDVAVTLFLVVLEVSCVRIFYAIS 443
T LF S +LR+C P+ N T ++R ++ +A+++ +S V + A+S
Sbjct: 855 TGKLFAIGSNSKILRICASPDLENFTNSDSERCPNSLSIALSVDRCAKALSVVDLSVALS 914
Query: 442 VCV 434
V +
Sbjct: 915 VAL 917
>SB_39161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2103
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 335 HADYGYDHNSGKIHPDTAKYAHLKTV 412
H D GY H S +IH DT Y K +
Sbjct: 1879 HGDTGYYHTSKEIHGDTGYYDTSKEI 1904
>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -3
Query: 529 RIFSTHDVAVTLFLVVLEVSCVRIFYAISVCVV-RLGHVIYGLQMCIFGGVRV 374
R+F+ V L + V C R+F + CV + V+ L C+ VRV
Sbjct: 1278 RVFTCRSACVHLSVRVCSPVCPRVFTCLFACVYPSVSRVLTCLSACVHLSVRV 1330
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 356 HNSGKIHPDTAKYA-HLKTVDYVAKPDYTYAYGVEDPHTGNLQNHKEQRD 502
H K + + A + H++ YV + +T + + HTG++QN + RD
Sbjct: 260 HIRNKSYVEQASHTGHIRNKSYVEQASHT-GHAEQASHTGHMQNGRHIRD 308
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,113,143
Number of Sequences: 59808
Number of extensions: 526294
Number of successful extensions: 1580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1580
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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