Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f12
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical ...    32   0.39 
U58748-8|AAM97986.1|  497|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot...    29   4.8  
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot...    29   4.8  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   4.8  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   4.8  
AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical...    29   4.8  
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF000261-9|AAB52923.3|  200|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z82284-6|CAE17979.1|  342|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>AC024796-2|AAK29892.2|  446|Caenorhabditis elegans Hypothetical
           protein Y48G1C.4 protein.
          Length = 446

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 501 TATSCVENIRWLSPTVPLDWLGIQQTRRTVSKL*YTKRPEVKL 629
           T+++C+    W+ P + +  LGI Q    + KL   K PE+K+
Sbjct: 233 TSSNCMSADTWIYPVLQMGLLGIHQEFEFLQKLFSLKNPELKM 275


>U58748-8|AAM97986.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK180.5b protein.
          Length = 497

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/62 (20%), Positives = 27/62 (43%)
 Frame = +2

Query: 266 SGPVSGQIVEVQVPAAEGIPAQQHADYGYDHNSGKIHPDTAKYAHLKTVDYVAKPDYTYA 445
           S PV+ Q+ E  +PAA+    ++ +  GY+  +  +      Y   +  +   +P+    
Sbjct: 417 SAPVAPQVTEYPIPAAQTEAPEEESKPGYEQTAPAVETKEESYDEQEAEETHVEPEQPAV 476

Query: 446 YG 451
            G
Sbjct: 477 VG 478


>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
            protein.
          Length = 2693

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 543  TVPLDWLGIQQTRRTVSKL*YTKRPEVKLKRPYITDIRNKTKMTPTTT 686
            T+PL  +GI     T      T  PE  L+  YI D  +K  +T +TT
Sbjct: 1838 TIPLTDMGIVNGHPTTLSCNVTGSPEPTLEWIYIDDSGHKINLTSSTT 1885


>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
            protein.
          Length = 2708

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 543  TVPLDWLGIQQTRRTVSKL*YTKRPEVKLKRPYITDIRNKTKMTPTTT 686
            T+PL  +GI     T      T  PE  L+  YI D  +K  +T +TT
Sbjct: 1853 TIPLTDMGIVNGHPTTLSCNVTGSPEPTLEWIYIDDSGHKINLTSSTT 1900


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 543   TVPLDWLGIQQTRRTVSKL*YTKRPEVKLKRPYITDIRNKTKMTPTTT 686
             T+PL  +GI     T      T  PE  L+  YI D  +K  +T +TT
Sbjct: 17664 TIPLTDMGIVNGHPTTLSCNVTGSPEPTLEWIYIDDSGHKINLTSSTT 17711


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 543   TVPLDWLGIQQTRRTVSKL*YTKRPEVKLKRPYITDIRNKTKMTPTTT 686
             T+PL  +GI     T      T  PE  L+  YI D  +K  +T +TT
Sbjct: 17679 TIPLTDMGIVNGHPTTLSCNVTGSPEPTLEWIYIDDSGHKINLTSSTT 17726


>AL117202-23|CAB97239.2| 1428|Caenorhabditis elegans Hypothetical
           protein Y47D3A.29 protein.
          Length = 1428

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -2

Query: 464 EDLLRHKRMCSPAWPR--NLRSSNVHIWRCPGVFSLNYDRIRNLRVVEPECLQPPVLGL 294
           E LL  K+   P W    N          C   F ++ +++RN++ +E     PP + L
Sbjct: 466 ERLLIEKKFMGPGWIELYNYSDPKAKTSNCKYEFEVDMEKMRNIKYLESSDAPPPTIKL 524


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 561  TSLTEPSGSTSEYSPRTTSPS 499
            +S T PSGS++EY+PR T  S
Sbjct: 1181 SSPTLPSGSSTEYTPRATQSS 1201


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 458 DPHTGNLQNHKEQRDGDVVRGEYSLVEPDG 547
           +P  G  Q HKE RD    RG+   VE  G
Sbjct: 309 EPEKGRKQEHKESRDRRPARGDSGEVEKRG 338


>AF000261-9|AAB52923.3|  200|Caenorhabditis elegans Hypothetical
           protein F19B10.2 protein.
          Length = 200

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = +2

Query: 386 AKYAHLKTVDYVAKPDYTYAYGVEDPHTGNLQNHKEQRDGDVVRGEYSLVEPDGSVRLVR 565
           A+Y HLK V  +AK      Y  E   T +  N K +R+   ++ E  L   D  + + +
Sbjct: 33  AEYEHLKKVTELAKMTKNRDYMTECEATSHAVNVKLERENKKLKDE--LARKDAEIMMQK 90

Query: 566 YTADPKNG 589
            + D   G
Sbjct: 91  ESGDGGGG 98


>Z82284-6|CAE17979.1|  342|Caenorhabditis elegans Hypothetical
           protein T27E7.9 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 733 ISQHRYYVLFKCFIRLVVVGVIFVLF 656
           I+ H +YV+   F++++V  V+F LF
Sbjct: 60  ITNHAHYVIKNYFVKVMVGSVVFALF 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,754,095
Number of Sequences: 27780
Number of extensions: 396041
Number of successful extensions: 1256
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)