Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f12
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   1.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    21   9.5  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 157 VVSILHHGLFI*DICRDPVSNSSLH 231
           ++++L HG  I  +C+D  S S+L+
Sbjct: 14  IINVLLHGQVICFVCKDITSTSALY 38


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 530 LVEPDGSVRLVRYTADPKNGFQAVVHKKAG 619
           L E DG+  L R   D  +GF   VH   G
Sbjct: 57  LAEFDGTTVLCRVCGDKASGFHYGVHSCEG 86


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 518 HARRRRHAVPCGSGGFLCEDLLRHKR 441
           H     H    G  GFLCE   RH++
Sbjct: 280 HVHHANHHAILGHSGFLCE---RHQK 302


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = -3

Query: 394 IFGGVRVYFP*IMIVSVICVLLSRNA 317
           +FG V +    + ++ +IC L   N+
Sbjct: 196 VFGSVAIAIAIVELIGIICALCLANS 221


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 449 GVEDPHTGNLQNHKEQRDGDVVRGEYSLVEP 541
           GV      N Q H  +R GDV      ++EP
Sbjct: 585 GVYTCSARNKQGHSARRSGDVAVIVPPIIEP 615


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 536 EPDGSVRLVRYTADPKNGFQAVVHKKAG 619
           E DG+  L R   D  +GF   VH   G
Sbjct: 1   EFDGTTVLCRVCGDKASGFHYGVHSCEG 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,927
Number of Sequences: 438
Number of extensions: 5131
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)