Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f09
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    45   4e-05
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    45   4e-05
Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z72518-2|CAA96700.1|  613|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
 Frame = +2

Query: 158 GTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYG--SKTLSDDCFMREIME 331
           GT E  +  +  + ++V  + + I+   T  ++C+D  G+LY   S   S +C   E M 
Sbjct: 103 GTKEESSKFSIVEFVSVAMSLVSIRGVETKNFICMDPSGKLYATPSSNYSTECVFLEEMM 162

Query: 332 KNNYNTYYK-MYDRKLT--YVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPI 496
           +N YN Y    Y  +    Y+ L+  G PR+   SK R+     +     L RL  P+
Sbjct: 163 ENYYNLYASCAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVHHDLDRLRSPV 220


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
 Frame = +2

Query: 158 GTIESDNADTTFKRLAVDRNRIVIQNAITCVYLCIDRCGQLYG--SKTLSDDCFMREIME 331
           GT E  +  +  + ++V  + + I+   T  ++C+D  G+LY   S   S +C   E M 
Sbjct: 103 GTKEESSKFSIVEFVSVAMSLVSIRGVETKNFICMDPSGKLYATPSSNYSTECVFLEEMM 162

Query: 332 KNNYNTYYK-MYDRKLT--YVALKNDGTPRKLQISKGRKLGKFSVYAMTLLKRLSFPI 496
           +N YN Y    Y  +    Y+ L+  G PR+   SK R+     +     L RL  P+
Sbjct: 163 ENYYNLYASCAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVHHDLDRLRSPV 220


>Z93378-3|CAB07585.3|  749|Caenorhabditis elegans Hypothetical
           protein F19H8.4 protein.
          Length = 749

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 24/83 (28%), Positives = 33/83 (39%)
 Frame = +2

Query: 299 SDDCFMREIMEKNNYNTYYKMYDRKLTYVALKNDGTPRKLQISKGRKLGKFSVYAMTLLK 478
           S  C MR    +  Y    K   R+   +      TP+  ++S    + K       L K
Sbjct: 98  SSKCVMRA---REQYKVQRKWQPRRPAAIPTTTVKTPKLKKLS----IKKVEAMRKALPK 150

Query: 479 RLSFPIYTSCPNIKNETIVQHRK 547
            L FP  T  P I+NE  +Q RK
Sbjct: 151 ELQFPTATEVPKIRNEVKIQARK 173


>Z50742-5|CAA90618.2|  650|Caenorhabditis elegans Hypothetical
           protein K09A11.5 protein.
          Length = 650

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 221 CDFCQRQGA*MWCRRCPIQWFRRKRFRLDLLPKTAG 114
           C  C R+G  +WC  CP   F  K    D  P+  G
Sbjct: 53  CCICARRGEVLWCHSCPAS-FHIKCLGYDTDPQPNG 87


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 154  RRNH*IGQRRHHIQAPCR*QKSHR-HSKR 237
            +RN  +G+R+ +I+A  R QK H+ H KR
Sbjct: 2859 KRNDLLGERKENIRASMRLQKLHQEHEKR 2887


>Z72518-2|CAA96700.1|  613|Caenorhabditis elegans Hypothetical
           protein ZC374.2 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 160 NH*IGQRRHHIQAPCR*QKSHRHSKRHYVCVPVHRPVWPTVRIKN 294
           NH +    H  Q P + Q   +HS+ H+  VP   P+ P   I N
Sbjct: 142 NHHVHPHPHQQQTPVQPQTHGQHSQGHHQ-VPAQSPIAPAGPIVN 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,546,321
Number of Sequences: 27780
Number of extensions: 283421
Number of successful extensions: 750
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)