Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f06
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)               30   1.5  
SB_4878| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)                       29   2.6  
SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_53255| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    28   7.9  
SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5)                       28   7.9  
SB_36543| Best HMM Match : Filo_VP24 (HMM E-Value=6.7)                 28   7.9  
SB_58411| Best HMM Match : SKIP_SNW (HMM E-Value=3.2)                  28   7.9  
SB_12918| Best HMM Match : Adeno_E3A (HMM E-Value=8.6)                 28   7.9  

>SB_14271| Best HMM Match : Pkinase (HMM E-Value=2.1e-27)
          Length = 2056

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 535  PLYSVDAAVADRKVKDMVNSIENQQTMLKVFINEANVY 648
            P+ ++ A +++R  KD+VN+   +  +L   IN  N+Y
Sbjct: 952  PIMALTATLSERHRKDLVNNFLRRPVVLSSSINRPNIY 989


>SB_4878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 535 PLYSVDAAVADRKVKDMVNSIENQQTMLKVFINEANVY 648
           P+ ++ A +++R  KD+VN+   +  +L   IN  N+Y
Sbjct: 363 PIMALTATLSERHRKDLVNNFLRKPVVLSSSINRPNIY 400


>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2047

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +1

Query: 217  KMNLKVILTPINLKGEEEPNCVERITIMPCSLMDTEICLNVRCRSPFAKFKVLII----V 384
            K+N  +I +   +  EEE + + +  ++ C L+ T+I L     SP   F    +    V
Sbjct: 1302 KINASIIQSVFEMMSEEELSFLRKGKLVSCKLLATDIPL---ASSPIVLFSTTAMFISHV 1358

Query: 385  DGFDSAYIQ 411
            D FDS+ I+
Sbjct: 1359 DSFDSSLIK 1367


>SB_6771| Best HMM Match : Aldedh (HMM E-Value=0)
          Length = 523

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
 Frame = +1

Query: 391 FDSAYIQATFCSISDSVTIVNKFN-EKHVMFDGFVRPDDEGTTMPY-------VIGPLYS 546
           FD+      FC  SD +T++   N +K V +  FV P    T+ PY       + GP+  
Sbjct: 357 FDNIKTYLDFCKSSDEITVLAGGNCDKSVGY--FVEPTIVETSNPYNKMMKEEIFGPVVC 414

Query: 547 VDAAVADRKVKDMVNSIEN 603
                 D K K+M++ ++N
Sbjct: 415 A-YVYPDEKYKEMMDVVDN 432


>SB_2653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1298

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -3

Query: 398 LSNPSTIINTLNLANGERHLTFKQISVSIKLHGIMVMRSTQLGSSSPFKLIG---VNITL 228
           L N S + N L+  NG  ++  K +  +IK+  ++  +S  +  S   ++IG   +N+ +
Sbjct: 234 LQNVSFVSNMLS-TNGLIYVNLKGVLCNIKIDKVLFTKSKHIARSGIVRIIGPNQLNVLI 292

Query: 227 RFILQMFN 204
             I+ M N
Sbjct: 293 TNIISMSN 300


>SB_30174| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 598

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 570 TIGDSSVD-RI*WSDDVRHCCTFIVRPYKPVKHYMFFVKFVNNCYT 436
           T GD  VD +  W D+ R    FI     P++H+++ V + +N  T
Sbjct: 443 TEGDWEVDTKTIWVDEERRLIYFIGTKDTPLEHHLYVVSYDDNSTT 488


>SB_53255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 190 PLAISSGFINSNRRLFS*TMTRGPNAAVS-RLASACR 83
           P+AI   FI   R LFS T+ R P A  S    S CR
Sbjct: 36  PIAIVQNFIIKFRELFSATLLRRPRACRSLSYVSTCR 72


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +3

Query: 9   RLAELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRV-----IVYENSRRFEFINP 173
           R AEL  LYN +Y     R+ GD   Q  A    +A G  V     I +E+ +RF  +  
Sbjct: 732 RSAELDRLYNRDYRIRVHRSRGDSG-QNEAERTNSAIGDAVVDGATIKWEHYKRFHGMTK 790

Query: 174 DEIA 185
           +EIA
Sbjct: 791 EEIA 794


>SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5)
          Length = 632

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +3

Query: 9   RLAELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRV-----IVYENSRRFEFINP 173
           R AEL  LYN +Y     R+ GD   Q  A    +A G  V     I +E+ +RF  +  
Sbjct: 259 RSAELDRLYNRDYRIRVHRSRGDSG-QNEAERTNSAIGDAVVDGATIKWEHYKRFHGMTK 317

Query: 174 DEIA 185
           +EIA
Sbjct: 318 EEIA 321


>SB_36543| Best HMM Match : Filo_VP24 (HMM E-Value=6.7)
          Length = 298

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +3

Query: 9   RLAELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRV-----IVYENSRRFEFINP 173
           R AEL  LYN +Y     R+ GD   Q  A    +A G  V     I +E+ +RF  +  
Sbjct: 172 RSAELDRLYNRDYRIRVHRSRGDSG-QNEAERTNSAIGDAVVDGATIKWEHYKRFHGMTK 230

Query: 174 DEIA 185
           +EIA
Sbjct: 231 EEIA 234


>SB_58411| Best HMM Match : SKIP_SNW (HMM E-Value=3.2)
          Length = 353

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +3

Query: 9   RLAELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRV-----IVYENSRRFEFINP 173
           R AEL  LYN +Y     R+ GD   Q  A    +A G  V     I +E+ +RF  +  
Sbjct: 2   RSAELDRLYNRDYRIRVHRSRGDSG-QNEAERTNSAIGDAVVDGATIKWEHYKRFHGMTK 60

Query: 174 DEIA 185
           +EIA
Sbjct: 61  EEIA 64


>SB_12918| Best HMM Match : Adeno_E3A (HMM E-Value=8.6)
          Length = 214

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
 Frame = +3

Query: 9   RLAELCTLYNAEYVFCQARADGDKDRQALASLLTAAFGPRV-----IVYENSRRFEFINP 173
           R AEL  LYN +Y     R+ GD   Q  A    +A G  V     I +E+ +RF  +  
Sbjct: 133 RSAELDRLYNRDYRIRVHRSRGDSG-QNEAERTNSAIGDAVVDGATIKWEHYKRFHGMTK 191

Query: 174 DEIA 185
           +EIA
Sbjct: 192 EEIA 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,737,959
Number of Sequences: 59808
Number of extensions: 383916
Number of successful extensions: 986
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)