Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f06
         (667 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical pr...    31   0.56 
AL117200-7|CAB55059.1|  221|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical ...    29   3.9  
U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>U00067-1|AAK20074.1|  305|Caenorhabditis elegans Hypothetical
           protein F54E7.5 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 388 GFDSAYIQATFCSISDSVTIVNKFNEKHVMFDGFVRPDDEGTTMPYVIGPLYSVDAAVAD 567
           G    +  ATF SISD   IV+K+ +   +    +  D+   T  + + P+  + + V D
Sbjct: 226 GMSPIHTNATFISISDEKPIVSKYIDFFSLMPPMIEYDESHLTDSFTVAPMPRLGSLVYD 285


>AL117200-7|CAB55059.1|  221|Caenorhabditis elegans Hypothetical
           protein Y50E8A.11 protein.
          Length = 221

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = -3

Query: 587 TMSFTLRSATAASTEYNGPMT*GIVVPSSSGLTNPSNITCFSLNLLTIVTLSLML 423
           T   T  + T   +E   P T  I+  ++   +NPSNI  +S+ +L IVTL +++
Sbjct: 118 TTEITTTTTTVLISEV--PSTTPIIKVAAFQQSNPSNIVLYSVLILVIVTLLILV 170


>AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical
           protein C24B9.3a protein.
          Length = 429

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 289 ITIMPCSLMDTEICLNVRCRSPFAKFKVLIIVDGFDSAYIQATF 420
           ++++  S   + ICL   C S   +  ++I+VD   +AY Q TF
Sbjct: 9   VSLLVASTSASHICLQTACSSFNVESDIVIVVDA-SNAYDQVTF 51


>U39653-2|AAM69064.1| 1092|Caenorhabditis elegans Hypothetical
           protein T13H2.5b protein.
          Length = 1092

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -3

Query: 392 NPSTIINTLNLANGERHLTFKQISVSIKLHGIMVMRSTQLGSSSPFKLIG 243
           +PST++   NL+  ERH   +Q+  S +L  ++   ++   S +  +++G
Sbjct: 167 HPSTMLAMGNLSINERHNKVQQVLASQELQDLIARHTSGAVSQTQVEVVG 216


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical protein
            T13H2.5a protein.
          Length = 2471

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = -3

Query: 392  NPSTIINTLNLANGERHLTFKQISVSIKLHGIMVMRSTQLGSSSPFKLIG 243
            +PST++   NL+  ERH   +Q+  S +L  ++   ++   S +  +++G
Sbjct: 1546 HPSTMLAMGNLSINERHNKVQQVLASQELQDLIARHTSGAVSQTQVEVVG 1595


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,672,743
Number of Sequences: 27780
Number of extensions: 292185
Number of successful extensions: 684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)