Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f05
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    27   0.67 
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    26   2.0  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    26   2.0  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    26   2.0  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   2.7  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    25   2.7  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   4.7  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    24   8.2  

>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 27.5 bits (58), Expect = 0.67
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 200 WNNATDRLQSKRSKRSISFDSLEEAQQF 283
           W+ A+D+++     R   FDS E AQ+F
Sbjct: 23  WDEASDQVKGYGGNRYKKFDSYEAAQEF 50


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 156 PTLWWRISGLILPSIGTTPLIGYKVNVASE 245
           P++W R+ G +L     T L+G ++ ++S+
Sbjct: 116 PSIWQRVKGGVLHFWDGTKLLGVEIKISSK 145


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 992

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 92   TAITGQKTYVESXKHXRNIDAANIVVENIRPNPTVDWNNATDRLQSKRSKRSI 250
            T   GQ++  +S     N   A   V   +P    +WN+A   + SK++K+ +
Sbjct: 940  TGKDGQQSNNKSQSELGNSSGAWSQVVRNKPKQGTEWNSAFKVVTSKKNKKRV 992


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 90  NVVPSRVTHSTGCLRLSAGY*TARSDKSI 4
           +V+P    HS  C R S+ Y  A  +KSI
Sbjct: 222 SVIPDSSFHSVACYRASSHYKEAPVEKSI 250


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 132 STNVTSTLPTLWWRISG 182
           STN TS LP+  W ++G
Sbjct: 180 STNTTSALPSSGWNVTG 196


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 70  HAQHRMFALVRGVLNRAIRQIYH 2
           HA +R +A  R  L +AI+ IYH
Sbjct: 49  HASYRGYAYSRHGLYKAIKHIYH 71


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 49  QTSGAVRDARRHYVYGYYRPKDV 117
           +T   + D R H++  YY P+DV
Sbjct: 287 KTISLMIDGRLHHLISYYTPEDV 309


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 140 RNIDAANIVVENIRPNPTVDW 202
           R  + AN   EN++P P  DW
Sbjct: 289 RKAENANRAAENLQPLPLDDW 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,996
Number of Sequences: 5004
Number of extensions: 20427
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)