Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3f05
(360 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0195 + 27379266-27379300,27379870-27382174 29 0.83
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 29 1.1
04_03_0446 - 16012926-16013042,16013266-16013469 29 1.5
03_01_0196 + 1559190-1560395 29 1.5
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 27 3.4
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 27 4.4
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 27 5.9
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 27 5.9
05_01_0539 + 4653028-4653158,4654329-4654973,4655323-4655448,465... 27 5.9
>01_06_0195 + 27379266-27379300,27379870-27382174
Length = 779
Score = 29.5 bits (63), Expect = 0.83
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = -2
Query: 50 CACPRGIEPRDPTNLS 3
C+CP G E RDPTN S
Sbjct: 293 CSCPPGYEMRDPTNWS 308
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 29.1 bits (62), Expect = 1.1
Identities = 22/89 (24%), Positives = 37/89 (41%)
Frame = +2
Query: 11 LSDRAVQYPADKRKHPVLCVTRDGTTFTAITGQKTYVESXKHXRNIDAANIVVENIRPNP 190
L+D A+ +PA+KR V C+T TA+ +Y R++ N++
Sbjct: 1687 LADPALDFPAEKRHEMVSCLTNVVVYETAMPLTVSYQVGLSSGRSL--------NVKSAR 1738
Query: 191 TVDWNNATDRLQSKRSKRSISFDSLEEAQ 277
W R+ R+ S S ++ E Q
Sbjct: 1739 IFRWEREESRIFMTRNFGSASLENAERVQ 1767
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 25 GSIPRGQAQTSGAVRDARRHYVYGYYRPKDVRGKP 129
G +PRG + G + + RR G +R + G P
Sbjct: 22 GGVPRGAEVSGGGLEEERRRQAKGSWRWRQAEGSP 56
>03_01_0196 + 1559190-1560395
Length = 401
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 49 QTSGAVRDARR-HYVYGYYRPKDVRGKPKAXT*HRRCQHCGGE 174
Q+ +++A R H + Y+ PK +RG P A T GG+
Sbjct: 80 QSLAGIKNALRLHAILDYFDPKKIRGLPDADTMTDTLYQAGGD 122
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 27.5 bits (58), Expect = 3.4
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = +2
Query: 14 SDRAVQYPADKRKHPVLCVTRDGTTFTAITGQKTYVESXKHXRNIDAANIVVENIRPNPT 193
+DRA DKR + D + FT +K S H + A+++ E++ PNP
Sbjct: 165 NDRAYTKKGDKR------ILIDESFFTWFNSEKN--RSFAHGAMDEVADVIKEDLWPNPL 216
Query: 194 VDWNNA-TDRLQSKRSKRSISFDSLEE 271
+NN + L+ +S D EE
Sbjct: 217 KYFNNEFEEELELLDDDDEVSDDDDEE 243
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 170 ENIRPNPTVDWNNATDRLQSKRSKRSISFDSLEEAQQ 280
ENI P+ +DW + D KR K+ + +E+ QQ
Sbjct: 108 ENIDPDDPIDWLHRND--MYKRQKKKSESEIIEQNQQ 142
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 92 TAITGQKTYVESXKHXRNIDAANIVVENIRPNPTVDWNNATDRLQSKRSKR 244
T +TG T S K N N +ENI+ V N + R +S R +R
Sbjct: 747 TKVTGDSTSCNSSKEDINKGRCNYNIENIK----VHMNEQSSRCRSTRIRR 793
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 92 TAITGQKTYVESXKHXRNIDAANIVVENIRPNPTVDWNNATDRLQSKRSKR 244
T +TG T S K N N +ENI+ V N + R +S R +R
Sbjct: 747 TKVTGDSTSCNSSKEDINKGRCNYNIENIK----VHMNEQSSRCRSTRIRR 793
>05_01_0539 +
4653028-4653158,4654329-4654973,4655323-4655448,
4655537-4655813,4655916-4656143
Length = 468
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 144 TSTLPTLWWRISGLILPSIGTTPLI 218
T+TLP L+WR LP+ G P +
Sbjct: 202 TATLPHLYWRYLHRNLPTTGQEPTV 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,864,202
Number of Sequences: 37544
Number of extensions: 135681
Number of successful extensions: 415
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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