Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f05
         (360 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)                29   1.5  
SB_14100| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-26)                 27   3.5  
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_58211| Best HMM Match : ANF_receptor (HMM E-Value=0)                26   8.0  

>SB_902| Best HMM Match : Collagen (HMM E-Value=0.00027)
          Length = 617

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 158 NIVVENIRPNPTVDWNNATDRLQSKRSKRS 247
           N +++NI  NPT++ N+   R Q    KR+
Sbjct: 580 NALIDNIPVNPTINGNHGNKRSQEMNEKRA 609


>SB_14100| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-26)
          Length = 350

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 177 IFSTTMLAASMLRXCFXLSTYVFWPVIAVNVVPSRVTHSTGC 52
           IF   +  +S     F LS  V   ++A+ V+PS  +H TGC
Sbjct: 82  IFGGNLRRSSSYMNVFLLSLSVSDILLALIVIPSYGSHCTGC 123


>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 173 NIRPNPTVDWNNATDRLQSKRSKRSISFDSLEEAQQFENR 292
           ++R    VD+N A DR  S R   +I+   + E ++ +NR
Sbjct: 324 SLRTKDIVDFNIAVDRRDSLRRATNITLVKVAEPEKGDNR 363


>SB_58211| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1316

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 182  PNPTVDWNNATDRLQSKRSKRSIS 253
            P+P V W     RL  +RSK  +S
Sbjct: 1255 PHPVVTWQRRNGRLPKRRSKAEMS 1278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,189,656
Number of Sequences: 59808
Number of extensions: 155916
Number of successful extensions: 383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)