Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f05
         (360 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M15841-1|AAA36796.1|  225|Homo sapiens protein ( Human U2 small ...    28   7.6  
BC036737-1|AAH36737.1|  225|Homo sapiens small nuclear ribonucle...    28   7.6  
BC018022-1|AAH18022.1|  225|Homo sapiens small nuclear ribonucle...    28   7.6  
BC008311-1|AAH08311.1|  109|Homo sapiens Similar to small nuclea...    28   7.6  
AL034428-1|CAB38777.2|  225|Homo sapiens small nuclear ribonucle...    28   7.6  

>M15841-1|AAA36796.1|  225|Homo sapiens protein ( Human U2 small
           nuclear RNA-associated B'' antigen mRNA, complete cds.
           ).
          Length = 225

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 173 NIRPNPTVDWNNATDRLQSKRSKRSI 250
           +IRPN T+  NN  D+++ +  KRS+
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSL 27


>BC036737-1|AAH36737.1|  225|Homo sapiens small nuclear
           ribonucleoprotein polypeptide B'' protein.
          Length = 225

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 173 NIRPNPTVDWNNATDRLQSKRSKRSI 250
           +IRPN T+  NN  D+++ +  KRS+
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSL 27


>BC018022-1|AAH18022.1|  225|Homo sapiens small nuclear
           ribonucleoprotein polypeptide B'' protein.
          Length = 225

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 173 NIRPNPTVDWNNATDRLQSKRSKRSI 250
           +IRPN T+  NN  D+++ +  KRS+
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSL 27


>BC008311-1|AAH08311.1|  109|Homo sapiens Similar to small nuclear
           ribonucleoprotein polypeptide B'' protein.
          Length = 109

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 173 NIRPNPTVDWNNATDRLQSKRSKRSI 250
           +IRPN T+  NN  D+++ +  KRS+
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSL 27


>AL034428-1|CAB38777.2|  225|Homo sapiens small nuclear
           ribonucleoprotein polypeptide B'' protein.
          Length = 225

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 173 NIRPNPTVDWNNATDRLQSKRSKRSI 250
           +IRPN T+  NN  D+++ +  KRS+
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSL 27


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,500,443
Number of Sequences: 237096
Number of extensions: 721129
Number of successful extensions: 1673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)