Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3f05
(360 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY095008-1|AAM11336.1| 455|Drosophila melanogaster GH12064p pro... 29 1.8
AE013599-3768|AAF47130.1| 455|Drosophila melanogaster CG3860-PA... 29 1.8
BT003492-1|AAO39495.1| 766|Drosophila melanogaster RE55430p pro... 28 4.1
AE014297-2928|AAF55848.1| 766|Drosophila melanogaster CG7034-PA... 28 4.1
AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p pro... 27 5.4
AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p pro... 27 5.4
AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA... 27 5.4
X62589-1|CAA44474.1| 1533|Drosophila melanogaster pumilio protein. 27 9.5
L07943-1|AAB59189.1| 1533|Drosophila melanogaster pumilio protei... 27 9.5
BT021317-1|AAX33465.1| 1298|Drosophila melanogaster RE10602p pro... 27 9.5
BT009970-1|AAQ22439.1| 1533|Drosophila melanogaster RE63138p pro... 27 9.5
AE014297-879|AAN13410.1| 1533|Drosophila melanogaster CG9755-PD,... 27 9.5
AE014297-878|AAN13409.1| 1533|Drosophila melanogaster CG9755-PC,... 27 9.5
AE014297-877|AAF54340.2| 1533|Drosophila melanogaster CG9755-PA,... 27 9.5
>AY095008-1|AAM11336.1| 455|Drosophila melanogaster GH12064p
protein.
Length = 455
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 202 PIDGRIRPDILHHNVGSVD 146
P D R+RPDILH G++D
Sbjct: 373 PTDSRLRPDILHLEEGNLD 391
>AE013599-3768|AAF47130.1| 455|Drosophila melanogaster CG3860-PA
protein.
Length = 455
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 202 PIDGRIRPDILHHNVGSVD 146
P D R+RPDILH G++D
Sbjct: 373 PTDSRLRPDILHLEEGNLD 391
>BT003492-1|AAO39495.1| 766|Drosophila melanogaster RE55430p
protein.
Length = 766
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 150 TLPTLWWRISGLILPSIGTTPLIGYKVNVASEAL 251
T P + RI LI+ SI T GY VN+ E L
Sbjct: 356 TDPNILLRIKNLIMLSINTFKCYGYTVNILWELL 389
>AE014297-2928|AAF55848.1| 766|Drosophila melanogaster CG7034-PA
protein.
Length = 766
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 150 TLPTLWWRISGLILPSIGTTPLIGYKVNVASEAL 251
T P + RI LI+ SI T GY VN+ E L
Sbjct: 356 TDPNILLRIKNLIMLSINTFKCYGYTVNILWELL 389
>AY118596-1|AAM49965.1| 165|Drosophila melanogaster LD48005p
protein.
Length = 165
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 83 CRRASRTAPDVCACPRGIEPRDPTNLS 3
C R ++T V CP + R PTN+S
Sbjct: 98 CYRCNKTGHWVRNCPEAVNERGPTNVS 124
>AY075371-1|AAL68216.1| 165|Drosophila melanogaster GM14667p
protein.
Length = 165
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 83 CRRASRTAPDVCACPRGIEPRDPTNLS 3
C R ++T V CP + R PTN+S
Sbjct: 98 CYRCNKTGHWVRNCPEAVNERGPTNVS 124
>AE013599-3513|AAN16117.1| 165|Drosophila melanogaster CG3800-PA
protein.
Length = 165
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 83 CRRASRTAPDVCACPRGIEPRDPTNLS 3
C R ++T V CP + R PTN+S
Sbjct: 98 CYRCNKTGHWVRNCPEAVNERGPTNVS 124
>X62589-1|CAA44474.1| 1533|Drosophila melanogaster pumilio protein.
Length = 1533
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1 SDRFVGSRGSIPRGQAQTSGAVRDARRHYVY 93
+D VGSRG + + A +GA A YV+
Sbjct: 20 TDAIVGSRGGVSQDAADAAGAAAAAAVGYVF 50
>L07943-1|AAB59189.1| 1533|Drosophila melanogaster pumilio protein
protein.
Length = 1533
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1 SDRFVGSRGSIPRGQAQTSGAVRDARRHYVY 93
+D VGSRG + + A +GA A YV+
Sbjct: 20 TDAIVGSRGGVSQDAADAAGAAAAAAVGYVF 50
>BT021317-1|AAX33465.1| 1298|Drosophila melanogaster RE10602p
protein.
Length = 1298
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1 SDRFVGSRGSIPRGQAQTSGAVRDARRHYVY 93
+D VGSRG + + A +GA A YV+
Sbjct: 20 TDAIVGSRGGVSQDAADAAGAAAAAAVGYVF 50
>BT009970-1|AAQ22439.1| 1533|Drosophila melanogaster RE63138p
protein.
Length = 1533
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1 SDRFVGSRGSIPRGQAQTSGAVRDARRHYVY 93
+D VGSRG + + A +GA A YV+
Sbjct: 20 TDAIVGSRGGVSQDAADAAGAAAAAAVGYVF 50
>AE014297-879|AAN13410.1| 1533|Drosophila melanogaster CG9755-PD,
isoform D protein.
Length = 1533
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1 SDRFVGSRGSIPRGQAQTSGAVRDARRHYVY 93
+D VGSRG + + A +GA A YV+
Sbjct: 20 TDAIVGSRGGVSQDAADAAGAAAAAAVGYVF 50
>AE014297-878|AAN13409.1| 1533|Drosophila melanogaster CG9755-PC,
isoform C protein.
Length = 1533
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1 SDRFVGSRGSIPRGQAQTSGAVRDARRHYVY 93
+D VGSRG + + A +GA A YV+
Sbjct: 20 TDAIVGSRGGVSQDAADAAGAAAAAAVGYVF 50
>AE014297-877|AAF54340.2| 1533|Drosophila melanogaster CG9755-PA,
isoform A protein.
Length = 1533
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 1 SDRFVGSRGSIPRGQAQTSGAVRDARRHYVY 93
+D VGSRG + + A +GA A YV+
Sbjct: 20 TDAIVGSRGGVSQDAADAAGAAAAAAVGYVF 50
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,054,424
Number of Sequences: 53049
Number of extensions: 223242
Number of successful extensions: 656
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 901135692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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