Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f05
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.      27   5.2  
Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical pr...    26   9.1  

>U97193-5|AAV34804.1|  783|Caenorhabditis elegans Hypothetical
           protein C06A5.3b protein.
          Length = 783

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +1

Query: 19  SRGSIPRGQAQTSGA--VRDARRHYVYGYYRPKDVRGKPKAXT*HRRCQHCGGE 174
           S G + R  +  S +  +RD  R   YGY + +  +  P + + HR C +C G+
Sbjct: 458 STGLLGRSNSPLSSSLRIRDRARPKHYGYSKVE--KTPPISASGHRHCVNCNGQ 509


>Z50044-7|CAA90359.1| 1415|Caenorhabditis elegans Hypothetical protein
            F22B5.7 protein.
          Length = 1415

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 182  PNPTVDWNNATDRLQSKRSKRSISFDSLEEAQQFENRI 295
            P P   W+N T   Q KR+  S S  S++ + Q +  I
Sbjct: 954  PQPVNGWSNNT--FQMKRTNSSSSISSIDTSDQIQRSI 989


>AF035197-1|AAC17865.1| 1415|Caenorhabditis elegans ZYG-9 protein.
          Length = 1415

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 182  PNPTVDWNNATDRLQSKRSKRSISFDSLEEAQQFENRI 295
            P P   W+N T   Q KR+  S S  S++ + Q +  I
Sbjct: 954  PQPVNGWSNNT--FQMKRTNSSSSISSIDTSDQIQRSI 989


>Z81592-9|CAB63315.1|  945|Caenorhabditis elegans Hypothetical
           protein T16G1.9 protein.
          Length = 945

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 43  QAQTSGAVRDARRHYVYGYYRP 108
           Q QT G V      Y YGY++P
Sbjct: 732 QVQTLGKVEHQLTKYAYGYWKP 753


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,759,739
Number of Sequences: 27780
Number of extensions: 118232
Number of successful extensions: 346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)