Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f05
         (360 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.4  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   4.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   4.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   5.9  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 244 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTXVLXAFHVR 113
           +L   TL  +S  +P+ G     I+     SV +T ++  FH R
Sbjct: 241 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 244 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTXVLXAFHVR 113
           +L   TL  +S  +P+ G     I+     SV +T ++  FH R
Sbjct: 241 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 244 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTXVLXAFHVR 113
           +L   TL  +S  +P+ G     I+     SV +T ++  FH R
Sbjct: 241 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLIFHHR 284


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 77  DGTTFTAITGQKTYVESXK 133
           D  TFT+ +G  TY ++ K
Sbjct: 44  DEWTFTSSSGDNTYTKTFK 62


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 77  DGTTFTAITGQKTYVESXK 133
           D  TFT+ +G  TY ++ K
Sbjct: 46  DEWTFTSSSGDNTYTKTFK 64


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 244 SLATFTL*PISGVVPIDGRIRPDILHHNVGSVDVTXVLXAFHVR 113
           +L   TL  +S  +P+ G     I+     SV +T ++  FH R
Sbjct: 309 NLVAETLPQVSDAIPLLGSYFNCIMFMVASSVVLTVLVLNFHHR 352


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,610
Number of Sequences: 438
Number of extensions: 1688
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)