Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f02
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   2.6  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   6.0  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   7.9  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 196 GSQISTGSNNPNKDVEVSSPPDDTVS 273
           GS +S   N PNK      PP+  +S
Sbjct: 55  GSLLSPSGNTPNKSSTSPYPPNHPLS 80


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +1

Query: 544 CHWIKAPNYTCLMTTSWDKTLKFWDTRTAVPSMTLNL 654
           C+W   PN T   +   D     W       S+ L+L
Sbjct: 18  CNWSSGPNATLQSSACTDDLSSCWSEDMGSFSLPLDL 54


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 679 VEYPMAVVGTADRGICMYTL 738
           V+YP  VV T +    MYTL
Sbjct: 36  VQYPRIVVSTFNIVFYMYTL 55


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,628
Number of Sequences: 336
Number of extensions: 4217
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)