Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3f02
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.7  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   5.3  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   5.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 634 PSMTLNLTERAYCADVEYP 690
           P   +N+T + YC D+E P
Sbjct: 314 PGTGINVTLKGYCIDMEVP 332


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 539 FTGASCAATCIVWLAAKSQHFTLLSVEAIKTFVPSSCQATS 417
           F G +   TCI+WLA    +F   +  A +T + + C A S
Sbjct: 707 FIGFTMYTTCIIWLAFVPIYFG--TGNAHETQITTLCVAIS 745


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 539 FTGASCAATCIVWLAAKSQHFTLLSVEAIKTFVPSSCQATS 417
           F G +   TCI+WLA    +F   +  A +T + + C A S
Sbjct: 797 FIGFTMYTTCIIWLAFVPIYFG--TGNAHETQITTLCVAIS 835


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding
          protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 58 NTRRKLVIGILLFCLHLYF 2
          NT++  +  + L CLH  F
Sbjct: 4  NTKQAFIYSLALLCLHAIF 22


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
          protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 58 NTRRKLVIGILLFCLHLYF 2
          NT++  +  + L CLH  F
Sbjct: 4  NTKQAFIYSLALLCLHAIF 22


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 350 HLTWQSQLPAIR 315
           HL W S +P+IR
Sbjct: 470 HLVWNSWMPSIR 481


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 553  SSGKSSLERRAPLPASF 503
            SSG +++   AP+PA F
Sbjct: 1042 SSGAAAMASAAPMPACF 1058


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,730
Number of Sequences: 438
Number of extensions: 5414
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)