Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3e24
         (663 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0447 - 3530766-3530942,3531058-3531147,3531396-3531478,353...    28   7.6  
12_01_0019 - 135627-135983,136564-136797,137118-137196,137268-13...    28   7.6  

>12_01_0447 -
           3530766-3530942,3531058-3531147,3531396-3531478,
           3531571-3531886,3531979-3532040,3532139-3532244,
           3532346-3532412,3532495-3532608,3532706-3532784,
           3533043-3533213,3534223-3534355,3534922-3535081,
           3535179-3535330
          Length = 569

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 454 NDVILDTIETIEYDLQNKVLTITAPVQDQELRKSIIYFNILNSS 585
           ND + D   T+     +  L + +P ++ + R+S+  F++LN S
Sbjct: 353 NDTVNDVANTVMQRFWDSTLALESPDEECDSRRSVDGFHLLNVS 396


>12_01_0019 -
           135627-135983,136564-136797,137118-137196,137268-137383,
           137847-137991,138177-138594,138644-138649,139315-139945
          Length = 661

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 244 HFLILQPHSLIFPTLEKRHSPRGSAKKKXLLWCAAF 137
           HFL   P S  F  L  +H P+    +  LL C AF
Sbjct: 32  HFLHRSPPSPCFLLLRTQHKPKPPQPQLHLLLCTAF 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,090,686
Number of Sequences: 37544
Number of extensions: 302287
Number of successful extensions: 644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)