Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3e24
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11098| Best HMM Match : Mak16 (HMM E-Value=5.1)                     29   3.4  
SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.5  

>SB_11098| Best HMM Match : Mak16 (HMM E-Value=5.1)
          Length = 460

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = +1

Query: 397 NKNEVAINRPKISSFKLQLNDVILDTIETIEYDLQNKVLT--ITAPVQDQE-LRKSIIYF 567
           N  EV +     +    QL++V  +    +   L N +    I+ PV+ QE L K+  ++
Sbjct: 45  NSKEVTVIELSGNEVAAQLHEVTSEVPPELA-GLPNSIWAKLISDPVEQQEKLDKNNFFY 103

Query: 568 N-ILNSSDSWEV 600
           N ILNS+D W++
Sbjct: 104 NSILNSNDKWQL 115


>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 289 NYQEAYLIWDTIVFVHFLILQPHSLIFPTLEKRHSPRGSAKKKXLL 152
           NY+EAY I +   FVH        + F  L   H PR  +K   +L
Sbjct: 351 NYKEAYKILEEAAFVHNYTKAQEMVAFSYLFGDHLPRNFSKAYEVL 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,856,850
Number of Sequences: 59808
Number of extensions: 368061
Number of successful extensions: 711
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)