Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3e20
         (211 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    19   5.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    19   5.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    19   5.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    19   5.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    19   5.5  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    18   9.5  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    18   9.5  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -1

Query: 46  LCIVPILVYVL 14
           LC++P  V++L
Sbjct: 301 LCLIPFRVFIL 311


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 43   CIVPILVYVL 14
            CIVP ++Y+L
Sbjct: 1028 CIVPGIIYLL 1037


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 43   CIVPILVYVL 14
            CIVP ++Y+L
Sbjct: 1028 CIVPGIIYLL 1037


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 43   CIVPILVYVL 14
            CIVP ++Y+L
Sbjct: 1028 CIVPGIIYLL 1037


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 43   CIVPILVYVL 14
            CIVP ++Y+L
Sbjct: 1028 CIVPGIIYLL 1037


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 84 FACHPCAG 61
          FAC  CAG
Sbjct: 53 FACDGCAG 60


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -2

Query: 84 FACHPCAG 61
          FAC  CAG
Sbjct: 53 FACDGCAG 60


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,910
Number of Sequences: 336
Number of extensions: 256
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 45
effective length of database: 107,465
effective search space used:  2579160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)