Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3e13
(749 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 227 7e-60
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 129 3e-30
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 57 2e-08
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 45 6e-05
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 35 0.081
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 7.0
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 9.3
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 227 bits (555), Expect = 7e-60
Identities = 107/186 (57%), Positives = 130/186 (69%)
Frame = +3
Query: 189 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 368
NPL EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88
Query: 369 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 548
+ + LFK+L KYRPET +P ++ G N +T LVE
Sbjct: 89 RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148
Query: 549 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 728
KKAQLVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVR 208
Query: 729 SGDRAS 746
D+ S
Sbjct: 209 QEDKNS 214
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 129 bits (311), Expect = 3e-30
Identities = 63/120 (52%), Positives = 76/120 (63%)
Frame = +3
Query: 387 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKAQL 566
LFK+L KYRPET +P ++ G N +T LVE KKAQL
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Query: 567 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRAS 746
VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V D+ S
Sbjct: 64 VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQEDKNS 123
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +3
Query: 510 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 683
+R G N TK + + A+ +V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 94 LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATG 153
Query: 684 VHRKTCTCLALTN 722
V R C N
Sbjct: 154 VTRPVIACAVTVN 166
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 45.2 bits (102), Expect = 6e-05
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 498 RPNTIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 665
+ T+R G V K + K + V++A DV PI+++ +P +C +PY V K
Sbjct: 95 KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 34.7 bits (76), Expect = 0.081
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3
Query: 519 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 677
G + K ++K++A L +++++ D V + ALC + G+P V +LG
Sbjct: 41 GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 500 PLWWRLIFLGNLSFSSFPQPLFPG 429
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 311 TSASSESAPSDQPIYPDTG 367
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 715 RAKHVHVLRCTSAPRRDLPLT 653
R +H H+ RCTSAP P T
Sbjct: 74 RKRHFHLRRCTSAPEPSSPNT 94
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 258 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 407
SR RW Y R+ KA+LQR ++ I Q T + K +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,411,718
Number of Sequences: 59808
Number of extensions: 429000
Number of successful extensions: 1164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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