Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3e11
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    29   0.036
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    25   0.44 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   1.8  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    21   7.2  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    21   9.5  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 29.1 bits (62), Expect = 0.036
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -3

Query: 493 NRGDY--SPPLAPRPTYCPVAF*GGTYEGCSPAMATPRLRDSSAAPPPVSVN 344
           N G Y  SPP AP+    P++  G T    SPA A P    SS +P  V+ N
Sbjct: 3   NGGIYEESPPPAPQSAATPISSSGMT----SPAAAPPPATTSSGSPASVASN 50


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 532 PETGGPGRHQGGA-IPPDDGEHRTVPYGTV*PGWLYTW*TRDSSPDGRTART 684
           PE GG    +G   +   + E +T     + P W+Y     D    GR+ RT
Sbjct: 160 PEVGGVEEAKGPVDLSKSEPEKKTESQPMLWPAWVYCTRYSDRPSSGRSPRT 211


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 242 HPPVSNGVRESGLKLWPRSRRPTP 313
           H P    +   G+K+ PR + P+P
Sbjct: 377 HQPFLLNIPSEGIKVEPRDKAPSP 400


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 611 GRCNPDGCTRGKHVTAA 661
           G+C PDG    +H+  A
Sbjct: 54  GKCTPDGAELKRHLPDA 70


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 611 GRCNPDGCTRGKHVTAA 661
           GRC+PDG    K++  A
Sbjct: 56  GRCSPDGLELKKNMPDA 72


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,785
Number of Sequences: 336
Number of extensions: 4846
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)