Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3e11
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    31   0.21 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.63 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    29   0.83 
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        28   1.5  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    27   3.4  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    26   4.4  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   5.9  

>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 565  PPGGAPAHLFPDDTAPRGSSAVHANRGDYSP-PLAPRPTYCPVA 437
            PP  AP    P    P G++A+  N G  +P PL  + T  P++
Sbjct: 1895 PPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETAVPLS 1938


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
 Frame = -3

Query: 565  PPGGAPAHLFPDDTAPRGSSAVHANRG-------DYSPPLAPRPTYC--PVAF*GGTYEG 413
            PP  AP+   P   AP G+  V A  G         + P  P+P+    PV    G    
Sbjct: 1064 PPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPV 1123

Query: 412  CSPAMATPRLRDSSAAPP 359
              P++A P +   S APP
Sbjct: 1124 PKPSVAAPPVPVPSGAPP 1141


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 21/71 (29%), Positives = 27/71 (38%)
 Frame = -3

Query: 568  LPPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAPRPTYCPVAF*GGTYEGCSPAMATP 389
            +PP   P+H  P       S    A+R   SP + P   Y P+A    T    +PA    
Sbjct: 945  VPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASST---VNPAHTYK 1001

Query: 388  RLRDSSAAPPP 356
                S   PPP
Sbjct: 1002 PHGGSQIVPPP 1012


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
 Frame = +2

Query: 80  NGSEAGGVTHYKCERRCPVPSIRPTLTG*VKLVAHNRDG-VPVCSWLAIEWTGPIHPPVS 256
           NGS++    H     R P PS RP   G    +     G + + S  +  +  P  PP +
Sbjct: 28  NGSQSNNTVHQYQPPRMPPPSTRPQTDGNSNQIPMENVGHISLSSANSHAYAPPSGPPPN 87

Query: 257 NGVRESG 277
            G    G
Sbjct: 88  TGANSYG 94


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 678 RGPSIGAAVTCLPRVQPSG 622
           + PS+GA   C+P  QPSG
Sbjct: 670 KAPSMGAKSLCIPLEQPSG 688


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 669 SIGAAVTCLPRVQPSGLHRPIRD 601
           SIG  VTC+ R  P+GL  P  D
Sbjct: 230 SIGGTVTCVIRNVPTGLGEPCFD 252


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 259 WGKRERSETMAEITTPHSYP*PAR 330
           W +R +S+T++ + T +S P P+R
Sbjct: 18  WSERLKSQTISHLPTDYSRPVPSR 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,225
Number of Sequences: 5004
Number of extensions: 70159
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)