Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc3e11
(687 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1017 + 21747044-21748051 31 0.86
03_02_0401 - 8146758-8146912,8147151-8147235,8147502-8147567,814... 31 0.86
06_03_0606 - 22689935-22689998,22690716-22691159,22691669-226920... 31 1.1
03_02_0915 + 12360079-12360095,12360225-12361353 30 1.5
09_04_0745 + 19884868-19886000,19886110-19886309,19886422-198866... 29 3.5
09_03_0082 + 12166464-12166526,12167350-12167376,12167921-121679... 29 3.5
07_03_1710 - 28903614-28903673,28904982-28905146,28905453-289056... 29 3.5
07_01_0600 - 4462337-4462774 29 3.5
04_04_0144 - 23095172-23095830,23095915-23097265 29 3.5
04_03_0500 + 16585157-16585201,16586840-16586978,16587456-165875... 29 3.5
01_06_0372 + 28828552-28829913 29 3.5
10_08_0797 + 20646091-20646519,20646531-20647460 29 4.6
05_03_0294 + 11818391-11820268,11820332-11820550,11820752-118216... 29 4.6
05_01_0192 + 1394342-1396645 29 4.6
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073... 29 4.6
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 29 4.6
07_01_0479 + 3606663-3607448 28 6.0
03_06_0306 + 33019798-33020025,33020163-33020258,33020357-330204... 28 6.0
03_02_0018 - 5016752-5017288 28 6.0
12_02_0806 - 23336329-23336511,23336658-23336781,23336817-233368... 28 8.0
10_08_0584 + 18971761-18971834,18971852-18973133,18973197-189745... 28 8.0
09_02_0082 - 4060018-4061604 28 8.0
07_01_0994 + 8382406-8382499,8382650-8383083 28 8.0
05_01_0520 - 4492182-4492780,4496886-4497951 28 8.0
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 28 8.0
>04_03_1017 + 21747044-21748051
Length = 335
Score = 31.1 bits (67), Expect = 0.86
Identities = 28/107 (26%), Positives = 39/107 (36%)
Frame = -3
Query: 619 TPSHKGQCGARHHQEGLLPPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAPRPTYCPV 440
+PS + A + PP A + + T PR +++ PP A P Y P
Sbjct: 222 SPSTPPRRAASPDYTPMSPPRRAASPDYTQMTPPRRAASPDYTPSTPPPPRAASPDYTP- 280
Query: 439 AF*GGTYEGCSPAMATPRLRDSSAAPPPVSVNVRRYHVQVMGRSGAS 299
P+ P +S PPP RRYH RSG +
Sbjct: 281 --------STPPSSPLPSAAESFTVPPP-----RRYHPYQRSRSGGA 314
>03_02_0401 -
8146758-8146912,8147151-8147235,8147502-8147567,
8147744-8147802,8147911-8148013,8148227-8148358,
8148447-8148527,8148729-8148821,8148978-8149061,
8149242-8149300,8149405-8149481,8149639-8149789,
8150302-8150437
Length = 426
Score = 31.1 bits (67), Expect = 0.86
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 678 RGPSIGAAVTCLPRVQPSGLHRPIRD 601
RG SIG VTC+ R P G+ P+ D
Sbjct: 254 RGDSIGGVVTCIARNVPRGIGSPVFD 279
>06_03_0606 - 22689935-22689998,22690716-22691159,22691669-22692057,
22692130-22692223,22692507-22692599,22692705-22692913,
22692999-22693833,22693948-22694038,22698069-22698892,
22699384-22700489,22701353-22701415
Length = 1403
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 418 RKCRLRTQRGNRWAGALAGGSNLPCWR 498
R+ R + RG + GA GG+ PCWR
Sbjct: 1315 RQNRAKILRGEKVGGARRGGARQPCWR 1341
>03_02_0915 + 12360079-12360095,12360225-12361353
Length = 381
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Frame = -3
Query: 574 GLLPPGGAPAHLFPDD-TAPRGSSAVHANR-GDYSPPLAPRPTYCPVAF*GGTYEGCSPA 401
G+L P A + P D +A G+ AV +R G Y P P P Y F G G P
Sbjct: 290 GVLGPRKAREMVVPGDHSAQSGALAVDGDRHGSYGFPFGPAPGYVDPFFAVGVPFGADPY 349
Query: 400 M 398
M
Sbjct: 350 M 350
>09_04_0745 +
19884868-19886000,19886110-19886309,19886422-19886666,
19886880-19887668
Length = 788
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 607 KGQCGARHHQEGLLPPGGAPAHLFPD-DTAPRGSSAVHANRGDYSPPLAPRP 455
KG+ A H + LL PG + A D D RGS+A A+ SP L P P
Sbjct: 176 KGEPHAAHTKAVLLSPGNSTALYDGDHDQHGRGSTATAASSAS-SPELRPMP 226
>09_03_0082 +
12166464-12166526,12167350-12167376,12167921-12167993,
12168517-12168773
Length = 139
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/32 (50%), Positives = 17/32 (53%)
Frame = -3
Query: 685 RSSRSVHRGCCHVFTTCTAIRVTPSHKGQCGA 590
RSS S C H FTT T V PSH G G+
Sbjct: 74 RSSYSSSSPCPHAFTTST---VAPSHPGSSGS 102
>07_03_1710 -
28903614-28903673,28904982-28905146,28905453-28905638,
28905784-28905927,28906281-28906460,28906559-28907215
Length = 463
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/61 (29%), Positives = 20/61 (32%)
Frame = -3
Query: 565 PPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAPRPTYCPVAF*GGTYEGCSPAMATPR 386
PP P P T P SPP P Y P + G PA ATP
Sbjct: 65 PPASPPPAPTPPQTRPPSPPPQQQQPRPVSPPPVAEPYYWPKPYDYGDAPREQPAYATPE 124
Query: 385 L 383
+
Sbjct: 125 V 125
>07_01_0600 - 4462337-4462774
Length = 145
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 502 PHCSLWGQCHPETGGPGRHQGGAIPPDDGEHRTV-PYGTV*PG 627
PH G+CH + G G G P G + P+ T+ PG
Sbjct: 94 PHRLFLGRCHADAGAAGPRSGDRAPEVSGAEVVLRPFFTLGPG 136
>04_04_0144 - 23095172-23095830,23095915-23097265
Length = 669
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 418 EGCSPAMATPRLRDSSAAPPPVSV 347
E SP++ TPR+ D+ PPP +V
Sbjct: 307 EAMSPSVYTPRVSDARPPPPPAAV 330
>04_03_0500 +
16585157-16585201,16586840-16586978,16587456-16587577,
16588850-16588900,16589289-16589601,16592816-16593162
Length = 338
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -3
Query: 511 SSAVHANRGDYSP-PLAPRPTYCPVAF*GGTYEGCSPAMATPRLRDSSA 368
+ A A R D P PLAP P P A + C+ AMA P+ D+ A
Sbjct: 153 AKANFAAREDLPPLPLAPAPVVMPYAAPPKRPKKCNTAMAPPQAVDTPA 201
>01_06_0372 + 28828552-28829913
Length = 453
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/56 (32%), Positives = 23/56 (41%)
Frame = -1
Query: 663 GAAVTCLPRVQPSGLHRPIRDSAVLAIIRRDCSPLVAPRPTCFRMTLPPEGAVRCT 496
GA C PR PS +A +A R C L PRP C + G+ C+
Sbjct: 121 GACARCSPRGSPSYYPTSSSSAAFVACGDRTCGEL--PRPLCSNVAGGGSGSGNCS 174
>10_08_0797 + 20646091-20646519,20646531-20647460
Length = 452
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/58 (34%), Positives = 23/58 (39%)
Frame = -3
Query: 679 SRSVHRGCCHVFTTCTAIRVTPSHKGQCGARHHQEGLLPPGGAPAHLFPDDTAPRGSS 506
SR VH G H A P+ RH + +PP GA L P D A G S
Sbjct: 107 SRVVHLGYEHSAAPAPAPAPAPAPAKTTARRHRKNFRVPP-GARRRLAPADAAALGGS 163
>05_03_0294 + 11818391-11820268,11820332-11820550,11820752-11821644,
11829889-11829905,11829927-11830183
Length = 1087
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 529 HPETGGPGRHQGGAIPPDDGEHRTVPYG 612
HP + PGR QGG P +G R++ G
Sbjct: 928 HPVSTRPGREQGGEAPEPNGGPRSLTAG 955
>05_01_0192 + 1394342-1396645
Length = 767
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 409 SPAMATPRLRDSSAAPPPVSVN-VRRYHVQVMGRSGAS*SRP*FQTALSYPITNRGVYWS 233
+P+ P SSAAPPP S+N + Q+ G S + S P + +S P TN S
Sbjct: 263 TPSSPPPEAPVSSAAPPPASLNPMLPSPPQLPGVSTTTPSPP--ASTVSMPPTNSVAVAS 320
Query: 232 RPFDS 218
P +S
Sbjct: 321 APANS 325
>03_06_0557 +
34704990-34705400,34706271-34706485,34707142-34707367,
34707447-34707532,34708030-34708121,34708232-34708471,
34709455-34709750
Length = 521
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 559 QGGAIPPDDGEHRTVPYGTV*PGW 630
+GG+ PP DG+ RTV + P W
Sbjct: 455 RGGSAPPRDGDERTVASSSSTPWW 478
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 595 GARHHQEGLLPPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAPRPT 452
GA HQE +P L P+ ++ ++ V A+R ++PP P P+
Sbjct: 309 GAGGHQERAVPAKPPALCLAPNASSSLFTAPVPADRQQFAPPPPPSPS 356
>07_01_0479 + 3606663-3607448
Length = 261
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/70 (35%), Positives = 27/70 (38%)
Frame = -3
Query: 565 PPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAPRPTYCPVAF*GGTYEGCSPAMATPR 386
PPG PA FP P + RG PP+ P P P GG G P M P
Sbjct: 190 PPGVPPA--FPGGPPPPPGPFM---RGP--PPMGP-PQVRP-GMPGGPPPGMRPGMPPPP 240
Query: 385 LRDSSAAPPP 356
R PPP
Sbjct: 241 FRPGMPPPPP 250
>03_06_0306 +
33019798-33020025,33020163-33020258,33020357-33020428,
33021274-33021339,33021699-33021764,33021852-33021926,
33023117-33023188,33024501-33024600,33024730-33024746,
33025558-33025650
Length = 294
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 578 GGIAPPWWRPGPPVSG*HCPQREQCGA 498
GG+ PP RP PP H Q +Q GA
Sbjct: 94 GGVQPPNLRPTPPTQVFHPQQSKQGGA 120
>03_02_0018 - 5016752-5017288
Length = 178
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -1
Query: 387 DYVIQVLPLLPYRSMCGGT-TCRLWVGVGRRD 295
D + ++L L RS+ CRLW V RRD
Sbjct: 39 DLLAEILARLDGRSLAAAACVCRLWAAVARRD 70
>12_02_0806 -
23336329-23336511,23336658-23336781,23336817-23336879,
23336880-23336992,23337212-23337302,23337397-23337461,
23338279-23338323,23338500-23338692,23339381-23339544,
23339645-23339836
Length = 410
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = +3
Query: 456 GRGASGGE*SPLLACTALLPLGAVSSGNRW 545
G GA GG +PLLA A PLG SG+RW
Sbjct: 7 GAGADGGATAPLLAGVA--PLG--YSGHRW 32
>10_08_0584 +
18971761-18971834,18971852-18973133,18973197-18974509,
18993885-18993935,18994674-18994829,18995048-18995123,
18995317-18995364,18995445-18995489,18995580-18995679,
18995923-18995968,18996115-18996176,18996257-18996355,
18996536-18996609,18996721-18996790,18997074-18997162,
18997327-18997404
Length = 1220
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 529 HPETGGPGRHQGGAIP-PDDG 588
HP + PGR QGG P P+DG
Sbjct: 821 HPVSTRPGREQGGEAPEPNDG 841
>09_02_0082 - 4060018-4061604
Length = 528
Score = 27.9 bits (59), Expect = 8.0
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = -3
Query: 568 LPPGGAPAHLFPDDTAPRGSSAVHANRGDYSPPLAPRPTYCPVAF*GGTYEGCSPAMATP 389
+P APA P AP A D P PT +F Y+G S + ATP
Sbjct: 184 VPTPPAPAPPVPTPLAP-------APPADVPPGFTVSPTITRYSF---GYDGASSSSATP 233
Query: 388 RLRDSSAA 365
R+R +S A
Sbjct: 234 RVRTTSLA 241
>07_01_0994 + 8382406-8382499,8382650-8383083
Length = 175
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Frame = +1
Query: 418 RKCRLRTQRGNRWAGALAGGSNL--------PCWRAPHCSLWGQCHPETGGPGRHQGG 567
R L R + W G A G ++ PC R SLW G PG H GG
Sbjct: 92 RLVMLSQPRSSEWCGRTATGGSMKEVLAIVRPCGRVEP-SLWATGGLAAGAPGAHGGG 148
>05_01_0520 - 4492182-4492780,4496886-4497951
Length = 554
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -1
Query: 396 LHQDYVIQVLPLLPYRSMC-GGTTCRLW 316
L D +++VL +PY+S+C CR W
Sbjct: 18 LTDDLLVEVLSRVPYKSLCRSKRVCRRW 45
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -1
Query: 129 HRLSHL**VTPPASEPFTSCALYW 58
HR SH T P S F +CA YW
Sbjct: 176 HRFSH---ATSPVSNVFRNCAYYW 196
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,621,914
Number of Sequences: 37544
Number of extensions: 689306
Number of successful extensions: 2231
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2229
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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