Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc3e11
         (687 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)             29   2.7  
SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)                  28   8.1  
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)                     28   8.1  
SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)                  28   8.1  
SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_56161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 213

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 565 PPGGAPAHLFPDDTAPRGSSAV--HANRGDYSPPLAPRPTYCPV 440
           PP G+  H  P  T     SA    A  G+Y PP AP P Y PV
Sbjct: 145 PPPGSTVHYPPPQTTMGYPSAQPGFAPPGNYPPPPAPPPAYPPV 188


>SB_10557| Best HMM Match : GCC2_GCC3 (HMM E-Value=7.2e-15)
          Length = 1215

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/54 (35%), Positives = 22/54 (40%)
 Frame = -1

Query: 357  PYRSMCGGTTCRLWVGVGRRDLGHSFRPLSLTPLLTGGCIGPVHSIASHEQTGT 196
            P    C G   + W GV R   GH  +  S TP    G  G V  I  H  TG+
Sbjct: 986  PGGKACTGVGLKYWTGVCRA--GHYCKGGSTTPTPDDGVTGNVCPIGKHCPTGS 1037


>SB_55246| Best HMM Match : DUF1168 (HMM E-Value=0.32)
          Length = 943

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 415 GCSPAMATPRLRDSSAAPPPVSVNVRRYHVQVMGRS 308
           G  P  A P +RDS   P P  V  RR    V+ +S
Sbjct: 66  GTGPGYAAPVVRDSYVPPEPKQVKARRAPRSVVKKS 101


>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
          Length = 2086

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 562  PGGAPAHLFPDDTAPRGSSAVHANRG-DYSPPLAPRP 455
            PGG+P+ L P D +P  S    A+   + +PPL   P
Sbjct: 1518 PGGSPSDLSPTDPSPGESPHPEADLSTEIAPPLEAAP 1554


>SB_15028| Best HMM Match : Drf_FH1 (HMM E-Value=0.84)
          Length = 944

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 562 PGGAPAHLFPDDTAPRGSSAVHANRG-DYSPPLAPRP 455
           PGG+P+ L P D +P  S    A+   + +PPL   P
Sbjct: 413 PGGSPSDLSPTDPSPGESPHPEADLSTEIAPPLEAAP 449


>SB_6482| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 155 GLDVYLAQDIVSHTYSE*LRQPRSHSRPVHYTGDRATGHQIKTTGFQSR 9
           GLD  + +D+      E L++ R+H    HY G R  G   KTTG + R
Sbjct: 102 GLDNKMREDL------ERLKKIRAHRGLRHYWGLRVRGQHTKTTGRKGR 144


>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 43  PVARSPV*CTGREWLRGWRSHSL*V*ETMSCAKYTSNPNGLSEISCS*QGRCTC 204
           P+AR+   C  + +  G+  +SL    T  C+    +P G   ++CS  G C C
Sbjct: 405 PIARALRGCVMQAFSDGF--YSLNAGNTAGCSACNCDPAGSINVTCSDGGACHC 456


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,243,602
Number of Sequences: 59808
Number of extensions: 652407
Number of successful extensions: 1507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)